Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0984.Seq
(560 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g33530.1 68416.m04290 transducin family protein / WD-40 repea... 31 0.53
At5g64060.1 68418.m08044 no apical meristem (NAM) family protein... 27 6.5
At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim... 27 6.5
At2g26610.1 68415.m03193 expressed protein ; expression support... 27 6.5
At4g11540.1 68417.m01851 DC1 domain-containing protein contains ... 27 8.6
At3g22380.1 68416.m02825 expressed protein 27 8.6
At1g74960.2 68414.m08700 3-ketoacyl-ACP synthase, putative simil... 27 8.6
At1g74960.1 68414.m08699 3-ketoacyl-ACP synthase, putative simil... 27 8.6
>At3g33530.1 68416.m04290 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 11
(SP:Q9BZH6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies, 3
weak)|2763187|gb|T46504.1|T46504
Length = 1345
Score = 31.1 bits (67), Expect = 0.53
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 188 SKIQAGHRRRSKSVLFPTHADGVDKILAAKFLRRWETHVLRLEEN 322
S++Q R + L TH +G D A+ L+RW HVL E N
Sbjct: 1199 SQLQDSGRWTDAATLAATHLEGSDY---ARVLQRWADHVLHAEHN 1240
>At5g64060.1 68418.m08044 no apical meristem (NAM) family protein
similar to NAC1 (GI:7716952) {Medicago truncatula};
contains Pfam PF02365: No apical meristem (NAM) protein
Length = 356
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 290 WETHVLRLEENHIVSKTVSFVTYIIPVYFK 379
W H RLE+ + K V TY++ V FK
Sbjct: 126 WVIHEYRLEDKVLAQKNVPQDTYVLCVLFK 155
>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative
similar to DEIH-box RNA/DNA helicase [Arabidopsis
thaliana] GI:5881579; contains Pfam profiles PF04408:
Helicase associated domain (HA2), PF00271: Helicase
conserved C-terminal domain
Length = 1299
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +2
Query: 89 YEMCVSIGFKSRMLRGQCRPRKFSCWSTSTTSGSKIQAGHRRRSKSVLFPTHADGVDKIL 268
++MC +G +S+ G+ R+ S + + +G+K +A + + + + G D IL
Sbjct: 55 HQMCRKMGIQSKS-SGRGEQRRLSIFKSRHKNGNKNEANEKSNKEKLKCVSFPPGADVIL 113
Query: 269 AAKF 280
F
Sbjct: 114 QELF 117
>At2g26610.1 68415.m03193 expressed protein ; expression supported by
MPSS
Length = 1249
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 188 SKIQAGHRRRSKSVLFPTHADGVDKILAAKFLRRWETHVLRLEEN 322
S++Q + L TH +G D A+ L+RW HV+ +E N
Sbjct: 1128 SQLQDAGCWTDSATLAATHLNGSDY---ARVLQRWAGHVVNIEHN 1169
>At4g11540.1 68417.m01851 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 525
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -1
Query: 329 QCGFLPNEEHAS-PISSRIWQRGSCQHRPRVLETAHS*SAFCGQLVSWTRRWYWC 168
QCGF+ +++ S P I + R VL +S C Q V WT Y C
Sbjct: 186 QCGFIIHQDCLSLPRLININRHAHRVSRTSVLGVVNSVCGVCHQKVDWTWGGYSC 240
>At3g22380.1 68416.m02825 expressed protein
Length = 1550
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 122 RMLRGQCRPRKFSCWSTSTTSGSKIQAGHR-RRSKSVLFPTHADGVDKILAA 274
R R C R W++STT G +G + R S P + ILA+
Sbjct: 209 RKARSACTKRPHESWASSTTGGGVFASGEQIHRQISSTSPANRVSPASILAS 260
>At1g74960.2 68414.m08700 3-ketoacyl-ACP synthase, putative similar
to 3-ketoacyl-ACP synthase [Cuphea pulcherrima]
gi|3800747|gb|AAC68860; identical to cDNA
beta-ketoacyl-ACP synthetase 2 nuclear gene for plastid
product GI:14582700
Length = 541
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 479 CD*YNNNNKYFLLIGQRHTS*YKNQ*RHNKIIS 381
C YNNNN L G S +NQ R N+ S
Sbjct: 73 CTHYNNNNALSSLFGSNSVSLNRNQRRLNRAAS 105
>At1g74960.1 68414.m08699 3-ketoacyl-ACP synthase, putative similar
to 3-ketoacyl-ACP synthase [Cuphea pulcherrima]
gi|3800747|gb|AAC68860; identical to cDNA
beta-ketoacyl-ACP synthetase 2 nuclear gene for plastid
product GI:14582700
Length = 541
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 479 CD*YNNNNKYFLLIGQRHTS*YKNQ*RHNKIIS 381
C YNNNN L G S +NQ R N+ S
Sbjct: 73 CTHYNNNNALSSLFGSNSVSLNRNQRRLNRAAS 105
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,152,914
Number of Sequences: 28952
Number of extensions: 219528
Number of successful extensions: 446
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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