Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0983.Seq
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 151 5e-38
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 151 6e-38
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 151 6e-38
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 91 1e-19
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 89 3e-19
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 68 1e-12
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.005
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.005
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 35 0.008
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 31 0.078
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 31 0.078
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.14
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 30 0.24
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 30 0.24
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.55
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 28 0.96
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 26 2.9
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 3.9
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 25 5.1
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 5.1
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 6.8
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 9.0
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 9.0
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.0
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 151 bits (367), Expect = 5e-38
Identities = 71/82 (86%), Positives = 75/82 (91%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T DIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ TGEFEAGISK+G
Sbjct: 72 TIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDG 131
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QTREHALLA+TLGVKQLIV VN
Sbjct: 132 QTREHALLAYTLGVKQLIVAVN 153
Score = 145 bits (352), Expect = 3e-36
Identities = 66/70 (94%), Positives = 68/70 (97%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 223 DKLKAERERG 252
DKLKAERERG
Sbjct: 61 DKLKAERERG 70
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 151 bits (366), Expect = 6e-38
Identities = 70/82 (85%), Positives = 75/82 (91%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T DIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ TGEFEAGISK+G
Sbjct: 72 TIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDG 131
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QTREHALLA+TLGVKQLIV VN
Sbjct: 132 QTREHALLAYTLGVKQLIVAVN 153
Score = 145 bits (352), Expect = 3e-36
Identities = 66/70 (94%), Positives = 68/70 (97%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 223 DKLKAERERG 252
DKLKAERERG
Sbjct: 61 DKLKAERERG 70
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 151 bits (366), Expect = 6e-38
Identities = 70/82 (85%), Positives = 75/82 (91%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T DIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ TGEFEAGISK+G
Sbjct: 72 TIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDG 131
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QTREHALLA+TLGVKQLIV VN
Sbjct: 132 QTREHALLAYTLGVKQLIVAVN 153
Score = 145 bits (352), Expect = 3e-36
Identities = 66/70 (94%), Positives = 68/70 (97%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 223 DKLKAERERG 252
DKLKAERERG
Sbjct: 61 DKLKAERERG 70
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 90.6 bits (215), Expect = 1e-19
Identities = 40/82 (48%), Positives = 55/82 (67%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T ++ FET +++DAPGH+ ++ NMI G SQAD VL++ A GEFEAG + G
Sbjct: 303 TVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGG 362
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QTREHA+LA T G+ L+V +N
Sbjct: 363 QTREHAVLARTQGINHLVVVIN 384
Score = 83.8 bits (198), Expect = 1e-17
Identities = 36/66 (54%), Positives = 49/66 (74%)
Frame = +1
Query: 55 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 234
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 235 AERERG 252
ERE+G
Sbjct: 296 EEREKG 301
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 89.4 bits (212), Expect = 3e-19
Identities = 43/82 (52%), Positives = 52/82 (63%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NG
Sbjct: 242 TMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENG 301
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QTREHA L LG+ +++V VN
Sbjct: 302 QTREHAYLLRALGISEIVVSVN 323
Score = 76.6 bits (180), Expect = 2e-15
Identities = 33/66 (50%), Positives = 46/66 (69%)
Frame = +1
Query: 55 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 234
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 235 AERERG 252
ER RG
Sbjct: 235 EERARG 240
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 67.7 bits (158), Expect = 1e-12
Identities = 33/75 (44%), Positives = 48/75 (64%)
Frame = +3
Query: 276 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNGQTREHAL 455
++ET+ + +D PGH D+IKNMITG + D A+++V A G+ QTREH L
Sbjct: 110 EYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLL 162
Query: 456 LAFTLGVKQLIVGVN 500
LA +GVKQ++V +N
Sbjct: 163 LARQVGVKQIVVYIN 177
Score = 35.1 bits (77), Expect = 0.006
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 135
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.005
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 29.1 bits (62), Expect = 0.42
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+ V +ID+PGH DF + D A+++V G
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG 134
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.005
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 29.1 bits (62), Expect = 0.42
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+ V +ID+PGH DF + D A+++V G
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG 134
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.7 bits (76), Expect = 0.008
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +3
Query: 279 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNGQTREH 449
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
Score = 30.3 bits (65), Expect = 0.18
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 247 RG 252
+G
Sbjct: 111 KG 112
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 31.5 bits (68), Expect = 0.078
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 279 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
F+ ++T +D PGH F G + AD VL+V G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 31.5 bits (68), Expect = 0.078
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.14
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 270 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDK 150
N VI H+D GKST + ++ G I++
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINE 87
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 29.9 bits (64), Expect = 0.24
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +3
Query: 297 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNGQTREHALLAFTLGV 476
+V+ +D PGH + M+ G + D A+L++ QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 477 KQLIV 491
K +I+
Sbjct: 163 KHIII 167
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 37 PKMGKEKTHINIVVIGHVDSGKST 108
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.9 bits (64), Expect = 0.24
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
IID PGH F GTS + A+L++ G
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVIDIMHG 585
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 28.7 bits (61), Expect = 0.55
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCG 138
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
Score = 28.7 bits (61), Expect = 0.55
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
T + A F + +ID PGH DF + + D AV I+ G
Sbjct: 80 TINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.9 bits (59), Expect = 0.96
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 309 IDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
ID PGH DF+ + + +D VL+V G
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVVDVIEG 245
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 2.9
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = -1
Query: 383 EHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIXCXPRSRSAFSLSNTQAYL 204
EH+A+ L S +L IS R N GNI L S + + S + L+ + A
Sbjct: 5 EHAALPLASS-PSILGPISGGR--NRGNIQLQSIPIEFQAVVFAGFGNSLYPLTGSDALP 61
Query: 203 KDPLPI 186
K LPI
Sbjct: 62 KALLPI 67
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 250 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWY 152
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -2
Query: 508 PLVFTPTMSCLTPRVKASKACSRVXPFLEXPASNSPVXAXTMS 380
PL M CL ++ + + S++ PF+ NS + T S
Sbjct: 418 PLCIFQYMDCLKSKLPSGEFLSKIVPFIYGCFENSSLNVQTTS 460
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -2
Query: 229 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 101
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 184 PGPPSRTSRWYVCQYHHIC 128
P PP +T + Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKN 344
+T+ID PG DFI N
Sbjct: 89 LTVIDTPGFGDFINN 103
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = -1
Query: 317 SINDGNIVLASFELPESNIXCXPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 138
S++ + L S+ P S A ++YL+ PL S S S + +R SIP
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364
>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 353 CDHVLDEISVSRSINDGNIVLASFEL 276
CDH+L IS SR G + FEL
Sbjct: 23 CDHLLQYISNSRDSKAGLKIFLVFEL 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,869,211
Number of Sequences: 5004
Number of extensions: 34001
Number of successful extensions: 128
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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