Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0983.Seq
(518 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 109 2e-24
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 8e-21
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 95 3e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 78 4e-15
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.25
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.43
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.00
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 1.3
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 27 9.3
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 27 9.3
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 27 9.3
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 109 bits (261), Expect = 2e-24
Identities = 48/80 (60%), Positives = 61/80 (76%)
Frame = +3
Query: 261 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNGQT 440
D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQT
Sbjct: 2 DVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQT 61
Query: 441 REHALLAFTLGVKQLIVGVN 500
REHA+L +LGV QLIV +N
Sbjct: 62 REHAILVRSLGVTQLIVAIN 81
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 8e-21
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 189
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 95.1 bits (226), Expect = 3e-20
Identities = 41/82 (50%), Positives = 57/82 (69%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T ++ F+T + T++DAPGH+ F+ NMI+G +QAD VL++ A GEFE G + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QTREHA+LA T GVK L++ VN
Sbjct: 269 QTREHAMLAKTAGVKHLVILVN 290
Score = 46.4 bits (105), Expect = 1e-05
Identities = 18/42 (42%), Positives = 30/42 (71%)
Frame = +1
Query: 127 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERG 252
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKG 207
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 78.2 bits (184), Expect = 4e-15
Identities = 34/37 (91%), Positives = 35/37 (94%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 365
T DIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 24 TIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 51.2 bits (117), Expect = 5e-07
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +1
Query: 187 MGKGSFKYAWVLDKLKAERERG 252
MGKGSFKYAWVLDKLKAERERG
Sbjct: 1 MGKGSFKYAWVLDKLKAERERG 22
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 31.5 bits (68), Expect = 0.43
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 247 RG 252
RG
Sbjct: 1987 RG 1988
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 30.7 bits (66), Expect = 0.75
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+T ID PGH F G + D VL+V A G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 30.3 bits (65), Expect = 1.00
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
IID PGH F G+S D A+L+V G
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVVDIMHG 714
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 58 THINIVVIGHVDSGKSTTTGHLIY 129
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 40 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 213
K+ + + NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNGQTR 443
+T++D PGH IK +I G + G E G ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGGAQ--------IIGECGTIEGGFGQSGKVK 143
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/47 (23%), Positives = 18/47 (38%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXA 395
T I + + + +D PGH F G D +++V A
Sbjct: 125 TQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 64 INIVVIGHVDSGKSTTTGHLIY 129
+ + V+G+VD+GKST G L +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTH 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,512
Number of Sequences: 59808
Number of extensions: 260767
Number of successful extensions: 649
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -