Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0983.Seq
(518 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 153 5e-38
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 153 5e-38
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 150 5e-37
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 150 5e-37
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 2e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 110 7e-25
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 110 7e-25
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 97 5e-21
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 64 8e-11
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 64 8e-11
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 60 7e-10
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 60 7e-10
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 60 7e-10
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 34 0.053
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.053
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 33 0.093
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.12
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.16
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.16
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.21
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 31 0.49
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 31 0.49
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.49
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.49
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 0.86
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.5
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 1.5
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 29 2.0
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 29 2.6
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 28 3.5
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 27 8.0
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 153 bits (372), Expect = 5e-38
Identities = 72/82 (87%), Positives = 75/82 (91%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T DIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+V TGEFEAGISKNG
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNG 131
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QTREHALLA TLGVKQLIV N
Sbjct: 132 QTREHALLAQTLGVKQLIVACN 153
Score = 150 bits (364), Expect = 5e-37
Identities = 69/70 (98%), Positives = 69/70 (98%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERERG 252
DKLKAERERG
Sbjct: 61 DKLKAERERG 70
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 153 bits (372), Expect = 5e-38
Identities = 72/82 (87%), Positives = 75/82 (91%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T DIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+V TGEFEAGISKNG
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNG 131
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QTREHALLA TLGVKQLIV N
Sbjct: 132 QTREHALLAQTLGVKQLIVACN 153
Score = 150 bits (364), Expect = 5e-37
Identities = 69/70 (98%), Positives = 69/70 (98%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERERG 252
DKLKAERERG
Sbjct: 61 DKLKAERERG 70
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 150 bits (364), Expect = 5e-37
Identities = 69/70 (98%), Positives = 69/70 (98%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERERG 252
DKLKAERERG
Sbjct: 61 DKLKAERERG 70
Score = 149 bits (362), Expect = 9e-37
Identities = 69/78 (88%), Positives = 73/78 (93%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T DIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+V TGEFEAGISKNG
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNG 131
Query: 435 QTREHALLAFTLGVKQLI 488
QTREHALLA TLGVKQL+
Sbjct: 132 QTREHALLAQTLGVKQLV 149
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 150 bits (364), Expect = 5e-37
Identities = 69/70 (98%), Positives = 69/70 (98%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERERG 252
DKLKAERERG
Sbjct: 61 DKLKAERERG 70
Score = 94.7 bits (225), Expect = 4e-20
Identities = 41/45 (91%), Positives = 44/45 (97%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
T DIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+V
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVV 116
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 2e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAER 243
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 110 bits (264), Expect = 7e-25
Identities = 52/82 (63%), Positives = 60/82 (73%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G G
Sbjct: 235 TMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGG 294
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QT+EHALL +LGV QLIV VN
Sbjct: 295 QTKEHALLLRSLGVTQLIVAVN 316
Score = 87.4 bits (207), Expect = 5e-18
Identities = 38/67 (56%), Positives = 50/67 (74%)
Frame = +1
Query: 52 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 231
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 232 KAERERG 252
+ ERERG
Sbjct: 227 EEERERG 233
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 110 bits (264), Expect = 7e-25
Identities = 52/82 (63%), Positives = 60/82 (73%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G G
Sbjct: 253 TMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGG 312
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QT+EHALL +LGV QLIV VN
Sbjct: 313 QTKEHALLLRSLGVTQLIVAVN 334
Score = 87.4 bits (207), Expect = 5e-18
Identities = 38/67 (56%), Positives = 50/67 (74%)
Frame = +1
Query: 52 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 231
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 232 KAERERG 252
+ ERERG
Sbjct: 245 EEERERG 251
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 97.5 bits (232), Expect = 5e-21
Identities = 43/82 (52%), Positives = 57/82 (69%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T ++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL++ A GEFE G + G
Sbjct: 174 TVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGG 233
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QTREH++L T GVK L++ VN
Sbjct: 234 QTREHSMLVKTAGVKHLVILVN 255
Score = 82.2 bits (194), Expect = 2e-16
Identities = 35/69 (50%), Positives = 50/69 (72%)
Frame = +1
Query: 46 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 225
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 226 KLKAERERG 252
ERE+G
Sbjct: 164 TNDEEREKG 172
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 63.7 bits (148), Expect = 8e-11
Identities = 35/82 (42%), Positives = 48/82 (58%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T ++A +E+ + D PGH DFIKNMI GTSQ D AVL++ A G E
Sbjct: 95 TINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME------- 147
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QT+EH +LA +GVK + + +N
Sbjct: 148 QTKEHLILAKQVGVKNMAIFIN 169
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 55 KTHINIVVIGHVDSGKSTTT 114
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 63.7 bits (148), Expect = 8e-11
Identities = 35/82 (42%), Positives = 48/82 (58%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T ++A +E+ + D PGH DFIKNMI GTSQ D AVL++ A G E
Sbjct: 95 TINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME------- 147
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QT+EH +LA +GVK + + +N
Sbjct: 148 QTKEHLILAKQVGVKNMAIFIN 169
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 55 KTHINIVVIGHVDSGKSTTT 114
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 60.5 bits (140), Expect = 7e-10
Identities = 32/67 (47%), Positives = 42/67 (62%)
Frame = +3
Query: 276 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNGQTREHAL 455
++ET+K + ID PGH D+IKNMITG +Q + A+L+V A G QTREH L
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 158
Query: 456 LAFTLGV 476
LA +GV
Sbjct: 159 LARQVGV 165
Score = 36.3 bits (80), Expect = 0.013
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 220 LDKLKAER 243
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 60.5 bits (140), Expect = 7e-10
Identities = 32/67 (47%), Positives = 42/67 (62%)
Frame = +3
Query: 276 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNGQTREHAL 455
++ET+K + ID PGH D+IKNMITG +Q + A+L+V A G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 456 LAFTLGV 476
LA +GV
Sbjct: 160 LARQVGV 166
Score = 36.3 bits (80), Expect = 0.013
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 220 LDKLKAER 243
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 60.5 bits (140), Expect = 7e-10
Identities = 32/67 (47%), Positives = 42/67 (62%)
Frame = +3
Query: 276 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNGQTREHAL 455
++ET+K + ID PGH D+IKNMITG +Q + A+L+V A G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 456 LAFTLGV 476
LA +GV
Sbjct: 160 LARQVGV 166
Score = 36.3 bits (80), Expect = 0.013
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 220 LDKLKAER 243
L+ A+R
Sbjct: 106 LEYETAKR 113
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 34.3 bits (75), Expect = 0.053
Identities = 21/67 (31%), Positives = 36/67 (53%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNGQTREHALLAFTLGVK 479
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 480 QLIVGVN 500
++I+ +N
Sbjct: 127 RVIIVLN 133
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 64 INIVVIGHVDSGKSTTT 114
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.053
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGI 144
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 33.5 bits (73), Expect = 0.093
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +3
Query: 255 TXDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKN 431
T I + E +K VT +D PGH F G AD VL+V A G E
Sbjct: 190 TQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE------ 243
Query: 432 GQTREHALLAFTLGVKQLIVGVN 500
QT + A V QL+V VN
Sbjct: 244 -QTAQSIKFAKDANV-QLVVAVN 264
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.12
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGID 147
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+ IID PGH DF + D AVL++ G
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGG 148
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.21
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 183
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
Y + +ID PGH DF + + D +L+V A G
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 31.1 bits (67), Expect = 0.49
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 285 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+ Y + IID PGH +F M AD V++V A G
Sbjct: 198 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 31.1 bits (67), Expect = 0.49
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 285 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+ Y + IID PGH +F M AD V++V A G
Sbjct: 73 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.49
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 19 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 129
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.49
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 19 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 129
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 30.3 bits (65), Expect = 0.86
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
IID PGH F G+S D A+L+V G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVVDIMHG 585
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 145 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 145 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 297 YVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
+V+ +D PGH + M+ G + D A L+V
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLV 158
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 64 INIVVIGHVDSGKSTTT 114
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+ +ID+PGH DF + + +D A+L++ G
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLIDVIEG 119
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+ +ID+PGH DF + + +D A+L++ G
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLIDVIEG 119
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 502 VFTPTMSCLTPRVKASKACSRVXPFLEXPASNSPVXAXTMSTA 374
+F PT+SC+ + AS S P + PA N V T+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +3
Query: 300 VTIIDAPGHRDFI--KNMITGTSQA 368
V IID+ G RDFI KN+ GT+ A
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGTADA 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,513,310
Number of Sequences: 27780
Number of extensions: 195832
Number of successful extensions: 566
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -