Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0983.Seq
(518 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 146 6e-36
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 146 6e-36
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 146 6e-36
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 146 6e-36
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 94 6e-20
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 87 5e-18
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 62 2e-10
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 60 7e-10
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 34 0.066
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 33 0.087
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 33 0.087
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 33 0.12
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 33 0.15
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 32 0.27
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 32 0.27
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 31 0.35
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 31 0.35
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 31 0.61
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 31 0.61
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 31 0.61
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 31 0.61
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 30 0.81
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 0.81
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 0.81
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 0.81
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 30 0.81
At5g13650.2 68418.m01585 elongation factor family protein contai... 27 7.6
At5g13650.1 68418.m01584 elongation factor family protein contai... 27 7.6
At5g06810.1 68418.m00770 mitochondrial transcription termination... 27 7.6
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 146 bits (355), Expect = 6e-36
Identities = 68/82 (82%), Positives = 74/82 (90%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T DIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+G
Sbjct: 72 TIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDG 131
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QTREHALLAFTLGVKQ+I N
Sbjct: 132 QTREHALLAFTLGVKQMICCCN 153
Score = 134 bits (324), Expect = 3e-32
Identities = 63/70 (90%), Positives = 64/70 (91%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 223 DKLKAERERG 252
DKLKAERERG
Sbjct: 61 DKLKAERERG 70
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 146 bits (355), Expect = 6e-36
Identities = 68/82 (82%), Positives = 74/82 (90%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T DIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+G
Sbjct: 72 TIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDG 131
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QTREHALLAFTLGVKQ+I N
Sbjct: 132 QTREHALLAFTLGVKQMICCCN 153
Score = 134 bits (324), Expect = 3e-32
Identities = 63/70 (90%), Positives = 64/70 (91%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 223 DKLKAERERG 252
DKLKAERERG
Sbjct: 61 DKLKAERERG 70
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 146 bits (355), Expect = 6e-36
Identities = 68/82 (82%), Positives = 74/82 (90%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T DIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+G
Sbjct: 72 TIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDG 131
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QTREHALLAFTLGVKQ+I N
Sbjct: 132 QTREHALLAFTLGVKQMICCCN 153
Score = 134 bits (324), Expect = 3e-32
Identities = 63/70 (90%), Positives = 64/70 (91%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 223 DKLKAERERG 252
DKLKAERERG
Sbjct: 61 DKLKAERERG 70
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 146 bits (355), Expect = 6e-36
Identities = 68/82 (82%), Positives = 74/82 (90%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T DIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+G
Sbjct: 72 TIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDG 131
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QTREHALLAFTLGVKQ+I N
Sbjct: 132 QTREHALLAFTLGVKQMICCCN 153
Score = 134 bits (324), Expect = 3e-32
Identities = 63/70 (90%), Positives = 64/70 (91%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 223 DKLKAERERG 252
DKLKAERERG
Sbjct: 61 DKLKAERERG 70
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 93.9 bits (223), Expect = 6e-20
Identities = 44/82 (53%), Positives = 55/82 (67%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T ++ FET TI+DAPGH+ ++ NMI+G SQAD VL++ A GEFE G + G
Sbjct: 166 TVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGG 225
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QTREH LA TLGV +LIV VN
Sbjct: 226 QTREHVQLAKTLGVSKLIVVVN 247
Score = 70.1 bits (164), Expect = 8e-13
Identities = 29/67 (43%), Positives = 48/67 (71%)
Frame = +1
Query: 52 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 231
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 232 KAERERG 252
+ ER +G
Sbjct: 158 EEERLKG 164
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 87.4 bits (207), Expect = 5e-18
Identities = 38/83 (45%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISK-N 431
T +A+ F + +++V ++D+PGH+DF+ NMI G +QAD A+L++ A G FEAG
Sbjct: 304 TMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEAGFDNLK 363
Query: 432 GQTREHALLAFTLGVKQLIVGVN 500
GQTREHA + GV+Q+IV +N
Sbjct: 364 GQTREHARVLRGFGVEQVIVAIN 386
Score = 81.8 bits (193), Expect = 3e-16
Identities = 34/65 (52%), Positives = 48/65 (73%)
Frame = +1
Query: 58 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 237
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 238 ERERG 252
ERERG
Sbjct: 298 ERERG 302
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 62.5 bits (145), Expect = 2e-10
Identities = 32/82 (39%), Positives = 47/82 (57%)
Frame = +3
Query: 255 TXDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNG 434
T + A ++ET + +D PGH D++KNMITG +Q D A+L+V G
Sbjct: 129 TINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP------- 181
Query: 435 QTREHALLAFTLGVKQLIVGVN 500
QT+EH LLA +GV ++V +N
Sbjct: 182 QTKEHILLAKQVGVPDMVVFLN 203
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 40 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 174
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 60.5 bits (140), Expect = 7e-10
Identities = 30/75 (40%), Positives = 44/75 (58%)
Frame = +3
Query: 276 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNGQTREHAL 455
++ET+K + +D PGH D++KNMITG +Q D +L+V G QT+EH L
Sbjct: 124 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMP-------QTKEHIL 176
Query: 456 LAFTLGVKQLIVGVN 500
LA +GV L+ +N
Sbjct: 177 LARQVGVPSLVCFLN 191
Score = 32.7 bits (71), Expect = 0.15
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTT 114
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLT 84
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 33.9 bits (74), Expect = 0.066
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
Y + +ID+PGH DF + T +D A+++V A G
Sbjct: 74 YSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
Score = 32.7 bits (71), Expect = 0.15
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGG 141
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 33.5 bits (73), Expect = 0.087
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 285 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+ Y I+D PGH +F M AD AVLIV A G
Sbjct: 206 SKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 33.5 bits (73), Expect = 0.087
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 285 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+ Y I+D PGH +F M AD AVLIV A G
Sbjct: 206 SKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 282 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
E S Y + +ID PGH DF + S A+L+V A G
Sbjct: 131 EASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAAQG 171
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 31 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 150
D K EK N +I H+D GKST L+ G I K
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK 95
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 32.7 bits (71), Expect = 0.15
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 55 KTHINIVVIGHVDSGKSTTTGHLIYKCG 138
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 31.9 bits (69), Expect = 0.27
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNGQTREH 449
Y V IID PGH DF + D A+L++ + G I+ + Q R +
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY 184
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGI 144
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 31.9 bits (69), Expect = 0.27
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNGQTREH 449
Y V IID PGH DF + D A+L++ + G I+ + Q R +
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY 184
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGI 144
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 31.5 bits (68), Expect = 0.35
Identities = 20/78 (25%), Positives = 35/78 (44%)
Frame = +3
Query: 285 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNGQTREHALLAF 464
T + +V+ +D PGH + M+ G + D A+L++ A QT EH
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAANES------CPQPQTAEHLASVD 177
Query: 465 TLGVKQLIVGVNTNGSLN 518
+ +K +I+ N +N
Sbjct: 178 MMRLKHIIILQNKIDLIN 195
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 31.5 bits (68), Expect = 0.35
Identities = 20/78 (25%), Positives = 35/78 (44%)
Frame = +3
Query: 285 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNGQTREHALLAF 464
T + +V+ +D PGH + M+ G + D A+L++ A QT EH
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAANES------CPQPQTAEHLASVD 177
Query: 465 TLGVKQLIVGVNTNGSLN 518
+ +K +I+ N +N
Sbjct: 178 MMRLKHIIILQNKIDLIN 195
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 30.7 bits (66), Expect = 0.61
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 279 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+E + + + +ID PGH DF + + + A+L+V A G
Sbjct: 147 YEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 188
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 165
N +I H+D GKST L+ G + R +++
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDMKE 120
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 30.7 bits (66), Expect = 0.61
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+T +D PGH F + G + D VL+V A G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 30.7 bits (66), Expect = 0.61
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 288 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
++Y + +ID+PGH DF + D A+++V G
Sbjct: 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCG 138
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 30.7 bits (66), Expect = 0.61
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 279 FETSKY----YVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNGQTRE 446
FE SK +V+ +D PGH + M+ G + D A+L++ A QT E
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANE------TCPQPQTSE 165
Query: 447 HALLAFTLGVKQLIV 491
H + +K +I+
Sbjct: 166 HLAAVEIMQLKHIII 180
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 30.3 bits (65), Expect = 0.81
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +3
Query: 297 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTGEFEAGISKNGQTREHALLAFTLGV 476
+V+ +D PGH + M+ G + D A+LI+ A QT EH + +
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAANE------TCPQPQTAEHLASVDMMHL 173
Query: 477 KQLIV 491
K +I+
Sbjct: 174 KDIII 178
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 30.3 bits (65), Expect = 0.81
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+ID PGH F G+S D A+L+V G
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVVDITHG 145
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 30.3 bits (65), Expect = 0.81
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+ID PGH F G+S D A+L+V G
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG 804
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 30.3 bits (65), Expect = 0.81
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+ID PGH F G+S D A+L+V G
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVVDIKHG 737
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 30.3 bits (65), Expect = 0.81
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
+ +ID PGH F G++ D A+L+V G
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVVDIMRG 592
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
V IID PGH DF + + D +L+V + G
Sbjct: 148 VNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEG 182
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXAXTG 404
V IID PGH DF + + D +L+V + G
Sbjct: 147 VNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEG 181
>At5g06810.1 68418.m00770 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 1141
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +1
Query: 118 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGXQXILLS 273
H + G+D + I K KEA+E+ S++ + K+KA + G + LS
Sbjct: 174 HHVLCYSGVDPKRIGKIFKEAREV--FSYETGVLASKIKAYEDLGFSRLFLS 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,983,167
Number of Sequences: 28952
Number of extensions: 186700
Number of successful extensions: 552
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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