Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0981.Seq
         (566 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P90922 Cluster: Putative uncharacterized protein; n=3; ...    35   1.2  
UniRef50_UPI00006CA448 Cluster: hypothetical protein TTHERM_0049...    34   2.0  
UniRef50_A4ATH1 Cluster: Na(+)-translocating NADH-quinone reduct...    34   2.0  
UniRef50_Q55AH1 Cluster: Putative uncharacterized protein; n=2; ...    33   4.7  
UniRef50_Q2YUH2 Cluster: UDP-N-acetylmuramoyl-tripeptide--D-alan...    33   6.2  

>UniRef50_P90922 Cluster: Putative uncharacterized protein; n=3;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 610

 Score = 35.1 bits (77), Expect = 1.2
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -3

Query: 519 SSVREISN*CAH*HCFYGDHFSLTLLGSLRINNVSYESTIIKAG 388
           ++V+E +N     HCF GD+  LTL G+    ++   S +++AG
Sbjct: 452 ATVKECANNDGSRHCFAGDYILLTLQGTFEPESIQTGSVVVRAG 495


>UniRef50_UPI00006CA448 Cluster: hypothetical protein
           TTHERM_00497080; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00497080 - Tetrahymena
           thermophila SB210
          Length = 1797

 Score = 34.3 bits (75), Expect = 2.0
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 405 TIIKAGNLTFGQ-LLVNQKNELLTLYSIGSHKTLQNDILDK*QVNY*PLFNE 253
           T   +G   F Q LL+N +NE + L+ IGS+K +QN IL      Y  L N+
Sbjct: 152 TTTYSGIYVFEQMLLLNNQNEQVFLFEIGSYKQMQNTILMTSDGQYLVLLNQ 203


>UniRef50_A4ATH1 Cluster: Na(+)-translocating NADH-quinone reductase
           subunit F; n=3; Flavobacteriales|Rep:
           Na(+)-translocating NADH-quinone reductase subunit F -
           Flavobacteriales bacterium HTCC2170
          Length = 121

 Score = 34.3 bits (75), Expect = 2.0
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 3   KKTPQFVLGKDRHL-IVMIKSLVYVSNAS*TQSTYSDSNSRLKVNMSRLLSKVAICAFGQ 179
           KK PQFV  KD+ L  ++++++++  +     +   D   ++K N  +   KV     G 
Sbjct: 39  KKNPQFVCLKDKELHFIVVRNVIFPMDPKKYDTELMD---KMKDNAQKHNGKVYFAGVGL 95

Query: 180 KNVIDMSIQIGLN 218
            N ID S+ + LN
Sbjct: 96  YNAIDQSLPVLLN 108


>UniRef50_Q55AH1 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 733

 Score = 33.1 bits (72), Expect = 4.7
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = -3

Query: 471 YGDHFSLTLLGSLRINNVSYESTIIKAGNLTFGQLLVNQKNELLTLYSIGSHKTLQNDIL 292
           +G  ++LT +  +R NN SY + +I + +  F  ++  +KN  +   S  SH  L N+I+
Sbjct: 487 WGKEWNLTFIAVVRPNNASYNNPVIISVSQPFSIVVKTRKNPQIRHNSYSSH-ILNNNIM 545


>UniRef50_Q2YUH2 Cluster:
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; n=16; Staphylococcus|Rep:
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase - Staphylococcus aureus (strain bovine RF122)
          Length = 452

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -3

Query: 465 DHFSLTLLGSLRINNVSYESTIIKAGNLTFGQLLVNQKNELLTLYSIGSHKTLQNDI 295
           +H+ L +LG   + N +    +     LT+ ++  N KN  LT   +  H TL+NDI
Sbjct: 273 EHYDLPILGKHNMKNATIAIAVGHELGLTYNRIYQNLKNVSLTGMRMEQH-TLENDI 328


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 505,726,280
Number of Sequences: 1657284
Number of extensions: 9480890
Number of successful extensions: 16738
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16737
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)