Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0981.Seq
         (566 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    24   1.0  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    22   4.2  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   4.2  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   5.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   7.3  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.7  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +1

Query: 142 VYYQR-WQSVHLDKKMLL 192
           VY  R WQ +HL+KK +L
Sbjct: 531 VYNHRPWQQLHLNKKQIL 548


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 465 DHFSLTLLGSLRINNVSYESTIIKAGNLTF 376
           +H+ L  L  L  NN+SY   +  A NL F
Sbjct: 147 EHYRLYQLSVLIDNNMSYIIIVSFATNLYF 176


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 188 Y*YVNTDWFEYNCLLQ 235
           Y  V+TD F Y CL+Q
Sbjct: 180 YTNVSTDAFFYTCLIQ 195


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 61  HLFTSATPVKPNLHIQT 111
           HL  S   +KP LH+ T
Sbjct: 181 HLRDSPNYIKPQLHVST 197


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 203 TDWFEYNCLLQ 235
           ++WF+ +CLLQ
Sbjct: 82  SNWFKIHCLLQ 92


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 4/13 (30%), Positives = 11/13 (84%)
 Frame = +2

Query: 146 IIKGGNLCIWTKK 184
           ++ GG +C+W+++
Sbjct: 504 LVLGGEVCLWSEQ 516


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,065
Number of Sequences: 336
Number of extensions: 2708
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)