Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0981.Seq
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)         31   0.87 
SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_3025| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.0  
SB_3023| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.0  
SB_31407| Best HMM Match : TolA (HMM E-Value=2.5)                      27   8.1  

>SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 183 NVIDMSIQIGLNIIVSFKEYGS-KPH*IKVNS*PVIYLRCRSEEFCDCQWNTKS 341
           N+ DM   +  +I+ S K     +P  ++    PV+Y+RC   ++C   W+ KS
Sbjct: 327 NLKDMRDNLHHDIVTSRKRQDEWEPAKVQYEG-PVLYIRCEDPKYCPVLWHYKS 379


>SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)
          Length = 1306

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 183  NVIDMSIQIGLNIIVSFKEYGS-KPH*IKVNS*PVIYLRCRSEEFCDCQWNTKS 341
            N+ DM   +  +I+ S K     +P  ++    PV+Y+RC   ++C   W+ KS
Sbjct: 1096 NLKDMRDNLHHDIVTSRKRQDEWEPAKVQYEG-PVLYIRCEDPKYCPVLWHYKS 1148


>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 156 VAICAFGQKNVIDMSIQIGLNIIVSFKEYGSKP 254
           V I +FG K    +S  +G N+++SF + G KP
Sbjct: 157 VGIVSFGDKTKQILSRTLGKNMLMSFMDVGKKP 189


>SB_3025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 480 HCFYGDHFSLTLLGSLRINNVSYESTI 400
           + + GD  +L L+G +R+ N+SYE  +
Sbjct: 127 NAYMGDSSNLELIGLIRVRNISYEKEV 153


>SB_3023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 480 HCFYGDHFSLTLLGSLRINNVSYESTI 400
           + + GD  +L L+G +R+ N+SYE  +
Sbjct: 127 NAYMGDSSNLELIGLIRVRNISYEKEV 153


>SB_31407| Best HMM Match : TolA (HMM E-Value=2.5)
          Length = 315

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +3

Query: 57  KSLVYVSNAS*T-QSTYSDSNSRLKVNMSRL-LSKVAICAFGQKNVIDMSIQ 206
           K L+ + N+S T +S +S SNS L+++MSR  +  V+    G    +D  IQ
Sbjct: 218 KILIRIKNSSHTVRSVHSRSNSGLRLSMSRSEIEPVSTEIRGVNRFVDRRIQ 269


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,744,172
Number of Sequences: 59808
Number of extensions: 293775
Number of successful extensions: 466
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)