BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0981.Seq (566 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87 SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07) 31 0.87 SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0 SB_3025| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0 SB_3023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0 SB_31407| Best HMM Match : TolA (HMM E-Value=2.5) 27 8.1 >SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 610 Score = 30.7 bits (66), Expect = 0.87 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +3 Query: 183 NVIDMSIQIGLNIIVSFKEYGS-KPH*IKVNS*PVIYLRCRSEEFCDCQWNTKS 341 N+ DM + +I+ S K +P ++ PV+Y+RC ++C W+ KS Sbjct: 327 NLKDMRDNLHHDIVTSRKRQDEWEPAKVQYEG-PVLYIRCEDPKYCPVLWHYKS 379 >SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07) Length = 1306 Score = 30.7 bits (66), Expect = 0.87 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +3 Query: 183 NVIDMSIQIGLNIIVSFKEYGS-KPH*IKVNS*PVIYLRCRSEEFCDCQWNTKS 341 N+ DM + +I+ S K +P ++ PV+Y+RC ++C W+ KS Sbjct: 1096 NLKDMRDNLHHDIVTSRKRQDEWEPAKVQYEG-PVLYIRCEDPKYCPVLWHYKS 1148 >SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 328 Score = 29.5 bits (63), Expect = 2.0 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +3 Query: 156 VAICAFGQKNVIDMSIQIGLNIIVSFKEYGSKP 254 V I +FG K +S +G N+++SF + G KP Sbjct: 157 VGIVSFGDKTKQILSRTLGKNMLMSFMDVGKKP 189 >SB_3025| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 228 Score = 29.5 bits (63), Expect = 2.0 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = -3 Query: 480 HCFYGDHFSLTLLGSLRINNVSYESTI 400 + + GD +L L+G +R+ N+SYE + Sbjct: 127 NAYMGDSSNLELIGLIRVRNISYEKEV 153 >SB_3023| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 228 Score = 29.5 bits (63), Expect = 2.0 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = -3 Query: 480 HCFYGDHFSLTLLGSLRINNVSYESTI 400 + + GD +L L+G +R+ N+SYE + Sbjct: 127 NAYMGDSSNLELIGLIRVRNISYEKEV 153 >SB_31407| Best HMM Match : TolA (HMM E-Value=2.5) Length = 315 Score = 27.5 bits (58), Expect = 8.1 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%) Frame = +3 Query: 57 KSLVYVSNAS*T-QSTYSDSNSRLKVNMSRL-LSKVAICAFGQKNVIDMSIQ 206 K L+ + N+S T +S +S SNS L+++MSR + V+ G +D IQ Sbjct: 218 KILIRIKNSSHTVRSVHSRSNSGLRLSMSRSEIEPVSTEIRGVNRFVDRRIQ 269 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,744,172 Number of Sequences: 59808 Number of extensions: 293775 Number of successful extensions: 466 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 450 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 466 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1337207630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -