BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0981.Seq (566 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 35 0.035 Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 35 0.035 U41746-5|AAT81186.1| 492|Caenorhabditis elegans Innexin protein... 28 4.1 U41746-4|AAA83332.1| 559|Caenorhabditis elegans Innexin protein... 28 4.1 Z46996-5|CAA87096.1| 268|Caenorhabditis elegans Hypothetical pr... 27 7.1 AC006722-1|AAK68420.1| 401|Caenorhabditis elegans Hypothetical ... 27 9.4 AC006645-6|AAF39847.1| 462|Caenorhabditis elegans Hypothetical ... 27 9.4 >Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical protein K07A12.4b protein. Length = 592 Score = 35.1 bits (77), Expect = 0.035 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = -3 Query: 519 SSVREISN*CAH*HCFYGDHFSLTLLGSLRINNVSYESTIIKAG 388 ++V+E +N HCF GD+ LTL G+ ++ S +++AG Sbjct: 434 ATVKECANNDGSRHCFAGDYILLTLQGTFEPESIQTGSVVVRAG 477 >Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical protein K07A12.4a protein. Length = 610 Score = 35.1 bits (77), Expect = 0.035 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = -3 Query: 519 SSVREISN*CAH*HCFYGDHFSLTLLGSLRINNVSYESTIIKAG 388 ++V+E +N HCF GD+ LTL G+ ++ S +++AG Sbjct: 452 ATVKECANNDGSRHCFAGDYILLTLQGTFEPESIQTGSVVVRAG 495 >U41746-5|AAT81186.1| 492|Caenorhabditis elegans Innexin protein 10, isoform b protein. Length = 492 Score = 28.3 bits (60), Expect = 4.1 Identities = 10/19 (52%), Positives = 16/19 (84%) Frame = +3 Query: 198 SIQIGLNIIVSFKEYGSKP 254 ++ IGL ++VSFK++G KP Sbjct: 32 NLLIGLAVLVSFKQFGGKP 50 >U41746-4|AAA83332.1| 559|Caenorhabditis elegans Innexin protein 10, isoform a protein. Length = 559 Score = 28.3 bits (60), Expect = 4.1 Identities = 10/19 (52%), Positives = 16/19 (84%) Frame = +3 Query: 198 SIQIGLNIIVSFKEYGSKP 254 ++ IGL ++VSFK++G KP Sbjct: 32 NLLIGLAVLVSFKQFGGKP 50 >Z46996-5|CAA87096.1| 268|Caenorhabditis elegans Hypothetical protein C34C12.5 protein. Length = 268 Score = 27.5 bits (58), Expect = 7.1 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = -3 Query: 468 GDHFSLTLLGSLRINNVSYESTIIKAGNLTFGQLLVNQKNELLTL 334 G+ F + L +L + + +E NLT Q+LV ++N+LLTL Sbjct: 121 GNFFFMQTLRALYLGDNDFEMLPGDVENLTNLQILVLRENDLLTL 165 >AC006722-1|AAK68420.1| 401|Caenorhabditis elegans Hypothetical protein Y19D10A.7 protein. Length = 401 Score = 27.1 bits (57), Expect = 9.4 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -3 Query: 447 LLGSLRINNVSYESTIIKAGNLTFGQLLVNQKNELLTLYSI 325 L+ L+I Y S II++ NLT L N K+ L YS+ Sbjct: 257 LVSKLKIVETIYGSLIIRSTNLTHIAFLENLKHILTFNYSV 297 >AC006645-6|AAF39847.1| 462|Caenorhabditis elegans Hypothetical protein F56A4.9 protein. Length = 462 Score = 27.1 bits (57), Expect = 9.4 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -3 Query: 447 LLGSLRINNVSYESTIIKAGNLTFGQLLVNQKNELLTLYSI 325 L+ L+I Y S II++ NLT L N K+ L YS+ Sbjct: 302 LVSKLKIVETIYGSLIIRSTNLTHIAFLENLKHILTFNYSV 342 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,168,543 Number of Sequences: 27780 Number of extensions: 241513 Number of successful extensions: 431 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 420 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 431 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1176726318 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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