Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0981.Seq
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical pr...    35   0.035
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    35   0.035
U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein...    28   4.1  
U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein...    28   4.1  
Z46996-5|CAA87096.1|  268|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AC006722-1|AAK68420.1|  401|Caenorhabditis elegans Hypothetical ...    27   9.4  
AC006645-6|AAF39847.1|  462|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical
           protein K07A12.4b protein.
          Length = 592

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -3

Query: 519 SSVREISN*CAH*HCFYGDHFSLTLLGSLRINNVSYESTIIKAG 388
           ++V+E +N     HCF GD+  LTL G+    ++   S +++AG
Sbjct: 434 ATVKECANNDGSRHCFAGDYILLTLQGTFEPESIQTGSVVVRAG 477


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -3

Query: 519 SSVREISN*CAH*HCFYGDHFSLTLLGSLRINNVSYESTIIKAG 388
           ++V+E +N     HCF GD+  LTL G+    ++   S +++AG
Sbjct: 452 ATVKECANNDGSRHCFAGDYILLTLQGTFEPESIQTGSVVVRAG 495


>U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein
           10, isoform b protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 198 SIQIGLNIIVSFKEYGSKP 254
           ++ IGL ++VSFK++G KP
Sbjct: 32  NLLIGLAVLVSFKQFGGKP 50


>U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein
           10, isoform a protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 198 SIQIGLNIIVSFKEYGSKP 254
           ++ IGL ++VSFK++G KP
Sbjct: 32  NLLIGLAVLVSFKQFGGKP 50


>Z46996-5|CAA87096.1|  268|Caenorhabditis elegans Hypothetical
           protein C34C12.5 protein.
          Length = 268

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -3

Query: 468 GDHFSLTLLGSLRINNVSYESTIIKAGNLTFGQLLVNQKNELLTL 334
           G+ F +  L +L + +  +E       NLT  Q+LV ++N+LLTL
Sbjct: 121 GNFFFMQTLRALYLGDNDFEMLPGDVENLTNLQILVLRENDLLTL 165


>AC006722-1|AAK68420.1|  401|Caenorhabditis elegans Hypothetical
           protein Y19D10A.7 protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 447 LLGSLRINNVSYESTIIKAGNLTFGQLLVNQKNELLTLYSI 325
           L+  L+I    Y S II++ NLT    L N K+ L   YS+
Sbjct: 257 LVSKLKIVETIYGSLIIRSTNLTHIAFLENLKHILTFNYSV 297


>AC006645-6|AAF39847.1|  462|Caenorhabditis elegans Hypothetical
           protein F56A4.9 protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 447 LLGSLRINNVSYESTIIKAGNLTFGQLLVNQKNELLTLYSI 325
           L+  L+I    Y S II++ NLT    L N K+ L   YS+
Sbjct: 302 LVSKLKIVETIYGSLIIRSTNLTHIAFLENLKHILTFNYSV 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,168,543
Number of Sequences: 27780
Number of extensions: 241513
Number of successful extensions: 431
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)