Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0981.Seq
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   6.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.6  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 2   KKNTSVCSRQRQTFDSDDKVTCLRQQRQ 85
           K+   +  R+R+  +  D+VT  +QQ+Q
Sbjct: 67  KEMEQMREREREQREHSDRVTSQQQQQQ 94


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 175 PNAQIATFDNRRLIFTFKRELESEY 101
           PN ++AT+DN    F +      +Y
Sbjct: 321 PNDEVATYDNTPRDFPYYMYSREQY 345


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 11  TSVCSRQRQTFDSDDKVTCLRQQRQLNPIY 100
           TSVCS  R      + +  L++  Q  P+Y
Sbjct: 602 TSVCSSPRSEDKEVEDMPVLKRVLQAPPLY 631


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,472
Number of Sequences: 438
Number of extensions: 3144
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)