Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0981.Seq
         (566 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32940.1 68414.m04057 subtilase family protein contains simil...    30   0.94 
At5g27510.1 68418.m03291 protein kinase family protein contains ...    27   6.6  
At1g14240.2 68414.m01686 nucleoside phosphatase family protein /...    27   6.6  
At1g14240.1 68414.m01685 nucleoside phosphatase family protein /...    27   6.6  
At1g64580.1 68414.m07320 pentatricopeptide (PPR) repeat-containi...    27   8.7  

>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 60  SLVYVSNAS*TQSTYSDSNSRLKVNMSRLLS-KVAIC 167
           SLVY  NA  T  T+S    RL +N +R ++ KV +C
Sbjct: 383 SLVYPENAGFTNETFSGVCERLNLNPNRTMAGKVVLC 419


>At5g27510.1 68418.m03291 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 301

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 308 RVL*LPMEYKVNNSFF*FTNNCPKVRLPALIIVDSYETLL 427
           RV  L +EY    S   F NNC   +LP L+I D    +L
Sbjct: 79  RVYKLLLEYASEGSLSDFMNNCVDRKLPDLMIRDFTRMIL 118


>At1g14240.2 68414.m01686 nucleoside phosphatase family protein /
           GDA1/CD39 family protein low similarity to nod factor
           binding lectin-nucleotide phosphohydrolase [Dolichos
           biflorus] GI:4868375; contains Pfam profile PF01150:
           GDA1/CD39 (nucleoside phosphatase) family
          Length = 479

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 549 NY*KCNNLVWSSVREISN*CAH*HCFYGDHFSLTLLGS 436
           N+ KC +  ++ ++E    C + HC  G  F+  L GS
Sbjct: 322 NFSKCRSATFALLKEGKENCLYEHCSIGSTFTPDLQGS 359


>At1g14240.1 68414.m01685 nucleoside phosphatase family protein /
           GDA1/CD39 family protein low similarity to nod factor
           binding lectin-nucleotide phosphohydrolase [Dolichos
           biflorus] GI:4868375; contains Pfam profile PF01150:
           GDA1/CD39 (nucleoside phosphatase) family
          Length = 483

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 549 NY*KCNNLVWSSVREISN*CAH*HCFYGDHFSLTLLGS 436
           N+ KC +  ++ ++E    C + HC  G  F+  L GS
Sbjct: 326 NFSKCRSATFALLKEGKENCLYEHCSIGSTFTPDLQGS 363


>At1g64580.1 68414.m07320 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 1052

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -3

Query: 459 FSLTLLGSLRINNVSYESTIIKAGNLTFGQLLVNQKNELLTL 334
           F+L++LG +    + YE +I+  G+L  G  LVN+  +  +L
Sbjct: 124 FALSVLGKMM--KLGYEPSIVTFGSLLHGFCLVNRIGDAFSL 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,099,288
Number of Sequences: 28952
Number of extensions: 209027
Number of successful extensions: 416
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)