Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0980.Seq
         (359 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   5.1  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   5.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   6.7  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    20   6.7  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 250 PTW*WKCIIHRQXQ*H 297
           P W W+CI  R  + H
Sbjct: 54  PQWTWQCINQRCERRH 69


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 58  LPVDDTLPSRLLEL 17
           +P  D LP+ LLEL
Sbjct: 462 VPASDNLPTLLLEL 475


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 242 SISAATAGCTGSCQVCACISVTGT 171
           ++  A+ G T     C C   TGT
Sbjct: 905 ALRPASGGTTARVVRCVCAGSTGT 928



 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 116 ATAGCTGSCKVCACISVTGT 57
           A+ G T     C C   TGT
Sbjct: 909 ASGGTTARVVRCVCAGSTGT 928


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 4/15 (26%), Positives = 11/15 (73%)
 Frame = -3

Query: 51  WMIHFHHDCWNCIHK 7
           +M+H ++  W C+++
Sbjct: 152 FMLHCNNTTWRCLYR 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,227
Number of Sequences: 336
Number of extensions: 1776
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7299165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)