Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0980.Seq
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   2.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   2.7  
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         24   8.2  
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce...    24   8.2  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    24   8.2  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    24   8.2  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 4    ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHP 108
            A+    P  V E YHPP    T  +   +Q P HP
Sbjct: 922  AIASPPPPKVGETYHPPTASGT--RVPPVQQPSHP 954



 Score = 25.0 bits (52), Expect = 3.5
 Identities = 20/58 (34%), Positives = 23/58 (39%)
 Frame = +1

Query: 49   PPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVHP 222
            PP  P   M A        PA+A+     P  V E YHPP    T  +    Q P HP
Sbjct: 908  PPPPPTASMTASA------PAIAS---PPPPKVGETYHPPTASGT--RVPPVQQPSHP 954


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 76   QAQTLQDPVHPAVAALMDTVPTVVMEVYHP 165
            QA  +   V PAV+A + T P VV  V HP
Sbjct: 1284 QASAVSSNV-PAVSASISTPPAVVPTVQHP 1312


>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 272 IHFHHHVGTVSISAATAGCTGS 207
           IH  + + TV I ++T  CTGS
Sbjct: 130 IHLTYLIDTVVIESSTFWCTGS 151


>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 363

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 239 ISAATAGCTGSCQVCA 192
           +S  T GCT  C+ CA
Sbjct: 62  LSIKTGGCTEDCKYCA 77



 Score = 23.8 bits (49), Expect = 8.2
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 113 TAGCTGSCKVCA 78
           T GCT  CK CA
Sbjct: 66  TGGCTEDCKYCA 77


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 103 HPAVAALMDTVPTVVMEVYHPPAVPV 180
           HPAV+A   T P+  +EVY    + V
Sbjct: 254 HPAVSAFYVTCPSKGIEVYGQDQIAV 279


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = -3

Query: 195 CLHQCYWNC--RWMIHFHHDCRNC 130
           C H+ +  C  +W++ + H C  C
Sbjct: 339 CKHEFHRPCIAKWIVDYRHACPTC 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,211,218
Number of Sequences: 5004
Number of extensions: 21921
Number of successful extensions: 60
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)