Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0980.Seq
(359 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 30 0.63
04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819 29 1.5
07_01_0752 - 5783305-5783416,5783739-5783836,5784550-5784675,578... 28 1.9
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 28 1.9
05_03_0384 - 13361999-13362120,13362241-13362252,13362921-133629... 27 3.4
05_03_0383 - 13352924-13353045,13353166-13353177,13353844-133539... 27 3.4
09_06_0354 - 22490833-22491417 27 5.9
05_01_0109 - 727663-727888,728742-728896,729013-729124,729229-72... 27 5.9
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 26 7.7
>06_03_1490 + 30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 29.9 bits (64), Expect = 0.63
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +1
Query: 13 DTVP-TVVMEVYHPPAVPVTLMQAQTLQD--PVHPAVAALMDTVPTVVMEVYHPPAVPVT 183
D+VP T + + +VP T MQ P P +L D+VP+ M+ +VP T
Sbjct: 933 DSVPGTPLQKSVFDYSVPSTPMQKSVFDYSVPSTPLQKSLFDSVPSTPMQKSVFDSVPST 992
Query: 184 LMQAQTWQD-PVHPAVAALMDTVPT 255
MQ + P P +L D+ P+
Sbjct: 993 PMQNSLFDSFPSTPMQRSLFDSGPS 1017
>04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819
Length = 451
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 52 PAVPVTLMQAQTLQD-PVHPAVAALMDTVPTVVME--VYHPPA 171
P+ + TL+D P+ P+ AA DT+P + +HPPA
Sbjct: 22 PSNTTVTLPPLTLRDVPLLPSAAAATDTIPNPISRHPYFHPPA 64
>07_01_0752 -
5783305-5783416,5783739-5783836,5784550-5784675,
5784890-5785090,5785185-5785268,5785519-5785566,
5785709-5785763,5786130-5786185,5786281-5786365,
5786485-5786558,5787093-5787159,5788134-5788216
Length = 362
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 231 CYRRMYWIL-PGLCLHQCYWNCRWMIHFHHDCRNCIHK 121
CY+ +Y +L PG QC+ W I H++ N HK
Sbjct: 187 CYKEIYRVLKPG----QCFAVYEWCITDHYEPNNATHK 220
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 28.3 bits (60), Expect = 1.9
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +1
Query: 22 PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQT 201
P +V EV+ + L QA Q + A L DTVP + + ++ AQT
Sbjct: 58 PALVQEVFMGNVLSANLGQAPARQAALG---AGLPDTVPCTTVNKVCSSGMKAVMLAAQT 114
Query: 202 WQDPVHPAVAA 234
Q +H V A
Sbjct: 115 IQLGMHDVVVA 125
>05_03_0384 -
13361999-13362120,13362241-13362252,13362921-13362981,
13363049-13363202,13364653-13364788,13365020-13365290,
13365654-13365962
Length = 354
Score = 27.5 bits (58), Expect = 3.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 145 VMEVYHPPAVPVTLMQAQTWQDPVH 219
+ E++HP + L+ A W DP+H
Sbjct: 241 ITELHHPIKKVMNLVTASKWSDPLH 265
>05_03_0383 -
13352924-13353045,13353166-13353177,13353844-13353904,
13353972-13354125,13355576-13355711,13355943-13356138
Length = 226
Score = 27.5 bits (58), Expect = 3.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 145 VMEVYHPPAVPVTLMQAQTWQDPVH 219
+ E++HP + L+ A W DP+H
Sbjct: 113 ITELHHPIKKVMNLVTASKWSDPLH 137
>09_06_0354 - 22490833-22491417
Length = 194
Score = 26.6 bits (56), Expect = 5.9
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 64 VTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVHPAVAA 234
V + T + + P V +D T PP VP+ Q+Q QDP P AA
Sbjct: 28 VVQLTTTTAELELEPTVTVQVDDNKTGAAADETPPVVPL---QSQETQDPNEPKAAA 81
>05_01_0109 -
727663-727888,728742-728896,729013-729124,729229-729437,
729554-730031,730765-730881,731664-731709,732056-732142,
732246-732327,732432-732461
Length = 513
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -1
Query: 326 WILQGL--CLHQCYXNC--RWMIHFHHHVGTVSISAATAGCTGSCQVC 195
W+L L C+ +C R ++ + + G++SIS G T C VC
Sbjct: 252 WVLADLMPCITSLRVSCVGRGIMGYMGNKGSISISLTVQGSTTMCFVC 299
>12_01_0220 -
1657554-1657620,1657943-1658109,1658110-1658267,
1658362-1658447,1658559-1658808,1659194-1660320,
1662207-1662351,1663555-1663696,1663775-1663828,
1663914-1663985,1664710-1664778,1664885-1664926,
1665024-1665092,1665257-1665394,1665518-1665628,
1665704-1665836,1666834-1666889,1667191-1667901
Length = 1198
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +1
Query: 46 HPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQT 201
H P P+ L+ + ++ P+ + +L V+++YH V L A T
Sbjct: 581 HSPPSPILLLLVEGVRVPLPRTIRSLALVAMITVVDLYHVLTAVVPLYVAMT 632
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,669,553
Number of Sequences: 37544
Number of extensions: 169432
Number of successful extensions: 571
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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