Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0980.Seq
(359 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23) 36 0.010
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 31 0.21
SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.37
SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8) 31 0.37
SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6) 30 0.65
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 29 0.86
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 28 2.6
SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1) 28 2.6
SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 27 3.5
SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_12503| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12) 27 4.6
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12) 27 6.1
SB_5026| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025) 26 8.0
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
Length = 197
Score = 35.9 bits (79), Expect = 0.010
Identities = 18/63 (28%), Positives = 24/63 (38%)
Frame = -3
Query: 192 LHQCYWNCRWMIHFHHDCRNCIHKCCYRRMYWIL*GLCLHQCYWNCRWMIHFHHDCWNCI 13
+H C CRW + D C C +R + +H C CRW I+ D C
Sbjct: 125 IHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRINRQADIHRCK 180
Query: 12 HKC 4
C
Sbjct: 181 STC 183
Score = 34.3 bits (75), Expect = 0.030
Identities = 17/63 (26%), Positives = 23/63 (36%)
Frame = -3
Query: 192 LHQCYWNCRWMIHFHHDCRNCIHKCCYRRMYWIL*GLCLHQCYWNCRWMIHFHHDCWNCI 13
+H C CRW + D C C +R + +H C CRW + D C
Sbjct: 91 IHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCK 146
Query: 12 HKC 4
C
Sbjct: 147 STC 149
Score = 32.7 bits (71), Expect = 0.092
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -3
Query: 192 LHQCYWNCRWMIHFHHDCRNCIHKCCYRRMYWIL*GLCLHQCYWNCRWMI 43
+H C CRW + D C C +R I +H+C CRW +
Sbjct: 142 IHTCKSTCRWRLDRQADIHTCKSTCRWR----INRQADIHRCKSTCRWQL 187
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/63 (25%), Positives = 22/63 (34%)
Frame = -3
Query: 192 LHQCYWNCRWMIHFHHDCRNCIHKCCYRRMYWIL*GLCLHQCYWNCRWMIHFHHDCWNCI 13
+H C C W + D C C +R + +H C CRW + D C
Sbjct: 74 IHTCKSTCPWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCK 129
Query: 12 HKC 4
C
Sbjct: 130 STC 132
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = -3
Query: 240 HKCCYRRMYWILPGLCLHQ-CYWN----CRWMIHFHHDCRNCIHKCCYRRMY 100
H CYR ++ C H+ CY+ C + H+H+ C + CYR Y
Sbjct: 13 HNRCYRHHHYCC--YCHHRYCYYRHHHYCWYRHHYHYPCYRHYYHRCYRHHY 62
Score = 31.1 bits (67), Expect = 0.28
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -3
Query: 240 HKCCY---RRMYWILPGLCLHQCYWNCRWMIHFHHDCRNCIHKCCYRRMY 100
H CCY R Y+ C ++ +++ H++H C H CCYR +
Sbjct: 21 HYCCYCHHRYCYYRHHHYCWYRHHYHYPCYRHYYHRCYR-HHYCCYRHRH 69
>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 30.7 bits (66), Expect = 0.37
Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 19 VPTVVMEVYHPPAVPVTLMQAQTLQDPVH--PAVAALMDTVPTVVMEVYHPPAVPVTLMQ 192
VP++ V P++ ++ Q ++++ V P++ L+ VP++ V H P++ ++ Q
Sbjct: 289 VPSIKTSVTQVPSIKTSVTQFRSIKTLVTQVPSIKTLVTQVPSIKTSVTHVPSIKTSVTQ 348
Query: 193 AQTWQDPV 216
+ + V
Sbjct: 349 VPSGKTSV 356
>SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8)
Length = 627
Score = 30.7 bits (66), Expect = 0.37
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +1
Query: 10 MDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPV--- 180
+DT+P VV + P V L + P V +DT+P VV + P V
Sbjct: 244 LDTLPRVVTRLDTLPRVVTRLDTLPRTRLDTLPRVVTRLDTLPRVVTRLDTLPRVVTCLD 303
Query: 181 TLMQAQTWQDPVHPAVAALMDTVP 252
TL + T D + P + +DT+P
Sbjct: 304 TLPRVGTRLDTL-PRIVTRLDTLP 326
>SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6)
Length = 269
Score = 29.9 bits (64), Expect = 0.65
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -1
Query: 236 SAATAGCTGSCQVCACISVTGTAXXXXXXXXXXXXXXXSAATAGCTGSCKVCACISVTGT 57
+AATA TG+ A ++ T TA + AT T + A ++VT T
Sbjct: 150 AAATATATGTTTATATVTATATATVTAAATATATATATATATTTSTATVTATATVTVTAT 209
Query: 56 A 54
A
Sbjct: 210 A 210
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 29.5 bits (63), Expect = 0.86
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -3
Query: 132 CIHKC---CYRRMYWIL*GLCLHQCYWNCRWMIHFHHDCWNCIHKCC 1
C + C CY Y+ C + CY+ C ++HH + C + CC
Sbjct: 476 CYYYCYCYCYYYCYYYCYCYCYYCCYY-CYCYYYYHH--YYCCYYCC 519
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -3
Query: 246 CIHKC---CYRRMYWILPGLCLHQCYWNCRWMIHFHHDCRNCIHKCC 115
C + C CY Y+ C + CY+ C ++HH C + CC
Sbjct: 476 CYYYCYCYCYYYCYYYCYCYCYYCCYY-CYCYYYYHH--YYCCYYCC 519
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -3
Query: 195 CLHQCYWNCRWMIHFHHDCRNCIHKCCYR 109
C HQC C W HH+C + C R
Sbjct: 424 CEHQCEELCAWKCR-HHECTKLCGEICDR 451
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -3
Query: 81 CLHQCYWNCRWMIHFHHDCWNCIHKCC 1
C HQC C W HH+C + C
Sbjct: 424 CEHQCEELCAWKCR-HHECTKLCGEIC 449
>SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1)
Length = 338
Score = 27.9 bits (59), Expect = 2.6
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Frame = +1
Query: 22 PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTV--VMEVYHPPAVPVTLMQA 195
P V E++HPP V V Q PVH + + + +V + H V Q
Sbjct: 5 PIVAPEIHHPPQVVVHTPYEQQQLTPVHTPLEPVHTSSKSVHTSPQSVHTSQVHNAAQQV 64
Query: 196 QTWQDPVH 219
PVH
Sbjct: 65 NNEAQPVH 72
>SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 27.9 bits (59), Expect = 2.6
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = +1
Query: 4 ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVT 183
A+ DT+ Y PA+ TL+ LQ P + A+ DT+ Y P +
Sbjct: 324 AITDTLLLQTSRYYRHPAITDTLL----LQTPCYYRHLAITDTLLLQTPCYYRHPTITDI 379
Query: 184 LMQAQTWQDPVHPAVAALM 240
+ QT + HPA+ ++
Sbjct: 380 PLLLQTSRYYRHPAITDIL 398
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 27.5 bits (58), Expect = 3.5
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 43 YHPPAVPVTLMQAQTL---QDPVHPAVAALMDTVPTVVMEVYHPPAV 174
+H +P L QAQ L +DP+ +A L D V E + PAV
Sbjct: 546 FHHYELPAILSQAQQLDPEEDPLADPIAMLTDEVQVPPAEPHPAPAV 592
>SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 27.5 bits (58), Expect = 3.5
Identities = 17/70 (24%), Positives = 26/70 (37%)
Frame = +1
Query: 10 MDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLM 189
+ T P + + PP + Q L PVH + T+P + + PP +
Sbjct: 64 LSTTPYYIQSISVPPLTTSSPSQYHPLLHPVH------LSTIPYYIQSISVPPLTTSSPS 117
Query: 190 QAQTWQDPVH 219
Q PVH
Sbjct: 118 QYHPLLHPVH 127
>SB_12503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.5 bits (58), Expect = 3.5
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 37 EVYHPPAVPVTLMQAQTLQDPVHPAVAAL-MDTVPTVVMEVYHPPAVPVTLMQAQTWQDP 213
E+Y P + + AQ D V P +A L +DTVP V+ + VPV AQ D
Sbjct: 13 EMYQPLWLDTVPVIAQLRLDTV-PVIALLRLDTVP--VIALLRLDTVPVI---AQLRLDT 66
Query: 214 VHPAVAAL-MDTVP 252
V P +A L +DTVP
Sbjct: 67 V-PVIALLRLDTVP 79
>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
Length = 1243
Score = 27.1 bits (57), Expect = 4.6
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Frame = -3
Query: 240 HKCCYRRMYWILPGLCLHQCYWNCRWMIHFHHDCRNC---------IHKCCYRRMYWIL 91
HKCCY R I+P + + C + D R C HKCC+ ++ IL
Sbjct: 180 HKCCYGR---IIPKYLKCEMFLRCGKNFYNLRDYRYCGNHYIFNRRFHKCCHNQVIPIL 235
>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1402
Score = 27.1 bits (57), Expect = 4.6
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Frame = -3
Query: 240 HKCCYRRMYWILPGLCLHQCYWNCRWMIHFHHDCRNC---------IHKCCYRRMYWIL 91
HKCCY R I+P + + C + D R C HKCC+ ++ IL
Sbjct: 180 HKCCYGR---IIPKYLKCEMFLRCGKNFYNLRDYRYCGNHYIFNRRFHKCCHNQVIPIL 235
>SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 49 PPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHP-PAVPVTLMQAQTWQDPVHPA 225
P + VT + Q + +HP A+ D VP+ +++ + A P+T + +++D P
Sbjct: 136 PVFLSVTEDRVQKVLSKLHPRKASGPDNVPSWLLKEFSDIMAQPITQILNASFKDQRLPP 195
Query: 226 VAALMDTVP 252
+ + D P
Sbjct: 196 IWKMADVPP 204
>SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12)
Length = 642
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 49 PPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHP-PAVPVTLMQAQTWQDPVHPA 225
P + VT + Q + +HP A+ D VP+ +++ + A P+T + +++D P
Sbjct: 170 PVFLSVTEDRVQKVLSKLHPRKASGPDNVPSWLLKEFSDIMAQPITQILNASFKDQRLPP 229
Query: 226 VAALMDTVP 252
+ + D P
Sbjct: 230 IWKMADVPP 238
>SB_5026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 49 PPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHP-PAVPVTLMQAQTWQDPVHPA 225
P + VT + Q + +HP A+ D VP+ +++ + A P+T + +++D P
Sbjct: 10 PVFLSVTEDRVQKVLSKLHPRKASGPDNVPSWLLKEFSDIMAQPITQILNASFKDQRLPP 69
Query: 226 VAALMDTVP 252
+ + D P
Sbjct: 70 IWKMADVPP 78
>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 26.2 bits (55), Expect = 8.0
Identities = 17/81 (20%), Positives = 27/81 (33%)
Frame = +1
Query: 7 LMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTL 186
+ D P++V ++ P HP A P+ V H PA P L
Sbjct: 243 IRDVRPSLVTDLARHAGSPHVSATPTAAGVSAHPIPVATSKVPPSGVSSAPHKPAQPGLL 302
Query: 187 MQAQTWQDPVHPAVAALMDTV 249
P+H +A ++
Sbjct: 303 AHFSQTHSPLHMPTSAAAGSI 323
>SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 26.2 bits (55), Expect = 8.0
Identities = 19/82 (23%), Positives = 35/82 (42%)
Frame = -3
Query: 249 NCIHKCCYRRMYWILPGLCLHQCYWNCRWMIHFHHDCRNCIHKCCYRRMYWIL*GLCLHQ 70
+C +K + + + CLH Y C +H ++C + +H C + +Y L LH
Sbjct: 105 DCANKNVHISICTVFLKECLHMLY-AC---VHVLYECLHVLHACLH-VLYACL--HVLHA 157
Query: 69 CYWNCRWMIHFHHDCWNCIHKC 4
C +H + C ++ C
Sbjct: 158 CLHVLYACLHVLYACLRVLYAC 179
>SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)
Length = 2182
Score = 26.2 bits (55), Expect = 8.0
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = +1
Query: 16 TVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVV---MEVYHPPAVP 177
+VP V + A P +A T V + + DT PT+V E PP P
Sbjct: 1899 SVPLEVQKEAAAAAEPTPTTEAATTTGKVLSSTEVMTDTTPTIVGSTTETVRPPEKP 1955
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -1
Query: 308 CLHQCYXNCRWMIHFHHHVGTVSISAATAGCTGSCQ 201
CLH C NC + H S T C SCQ
Sbjct: 1901 CLHTCAGNCNSCLQQRVHEQCKSKCDRTLFCGHSCQ 1936
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,848,980
Number of Sequences: 59808
Number of extensions: 203804
Number of successful extensions: 895
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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