BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0980.Seq (359 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 27 0.089 AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 27 0.089 AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 21 5.9 >AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor protein. Length = 139 Score = 26.6 bits (56), Expect = 0.089 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = -3 Query: 141 CRNCIHKCCYRRMYWIL*GLC 79 CRNCIH + ++W+ G C Sbjct: 35 CRNCIHPTVFSVLFWL--GYC 53 Score = 24.6 bits (51), Expect = 0.36 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Frame = -3 Query: 252 RNCIHKCCYRRMYWILPGLC---LHQCYWNCRWMIHFHHDCRNCIHKC-CYRR 106 RNCIH + ++W+ G C ++ C + + F ++ I KC C RR Sbjct: 36 RNCIHPTVFSVLFWL--GYCNSAINPCIY-ALFSKDFRFAFKSIICKCFCKRR 85 >AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor protein. Length = 587 Score = 26.6 bits (56), Expect = 0.089 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = -3 Query: 141 CRNCIHKCCYRRMYWIL*GLC 79 CRNCIH + ++W+ G C Sbjct: 483 CRNCIHPTVFSVLFWL--GYC 501 Score = 24.6 bits (51), Expect = 0.36 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Frame = -3 Query: 252 RNCIHKCCYRRMYWILPGLC---LHQCYWNCRWMIHFHHDCRNCIHKC-CYRR 106 RNCIH + ++W+ G C ++ C + + F ++ I KC C RR Sbjct: 484 RNCIHPTVFSVLFWL--GYCNSAINPCIY-ALFSKDFRFAFKSIICKCFCKRR 533 >AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A isoform protein. Length = 567 Score = 20.6 bits (41), Expect = 5.9 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +1 Query: 49 PPAVPVTLMQAQTLQDPVHPAVAA 120 PP+VPV A T + P +AA Sbjct: 54 PPSVPVGSAVAGTAGGALFPGMAA 77 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 83,574 Number of Sequences: 438 Number of extensions: 1883 Number of successful extensions: 16 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 16 length of database: 146,343 effective HSP length: 51 effective length of database: 124,005 effective search space used: 8432340 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 39 (20.8 bits)
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