Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0980.Seq
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    27   0.089
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    27   0.089
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.9  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 26.6 bits (56), Expect = 0.089
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 141 CRNCIHKCCYRRMYWIL*GLC 79
           CRNCIH   +  ++W+  G C
Sbjct: 35  CRNCIHPTVFSVLFWL--GYC 53



 Score = 24.6 bits (51), Expect = 0.36
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -3

Query: 252 RNCIHKCCYRRMYWILPGLC---LHQCYWNCRWMIHFHHDCRNCIHKC-CYRR 106
           RNCIH   +  ++W+  G C   ++ C +   +   F    ++ I KC C RR
Sbjct: 36  RNCIHPTVFSVLFWL--GYCNSAINPCIY-ALFSKDFRFAFKSIICKCFCKRR 85


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 26.6 bits (56), Expect = 0.089
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 141 CRNCIHKCCYRRMYWIL*GLC 79
           CRNCIH   +  ++W+  G C
Sbjct: 483 CRNCIHPTVFSVLFWL--GYC 501



 Score = 24.6 bits (51), Expect = 0.36
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -3

Query: 252 RNCIHKCCYRRMYWILPGLC---LHQCYWNCRWMIHFHHDCRNCIHKC-CYRR 106
           RNCIH   +  ++W+  G C   ++ C +   +   F    ++ I KC C RR
Sbjct: 484 RNCIHPTVFSVLFWL--GYCNSAINPCIY-ALFSKDFRFAFKSIICKCFCKRR 533


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 49  PPAVPVTLMQAQTLQDPVHPAVAA 120
           PP+VPV    A T    + P +AA
Sbjct: 54  PPSVPVGSAVAGTAGGALFPGMAA 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,574
Number of Sequences: 438
Number of extensions: 1883
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)