BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0980.Seq (359 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 38 0.002 At1g54970.1 68414.m06278 proline-rich family protein similar to ... 34 0.025 At2g27380.1 68415.m03302 proline-rich family protein contains pr... 31 0.30 At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 30 0.53 At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 29 0.70 At3g61670.1 68416.m06911 expressed protein weak similarity to ex... 29 1.2 At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 29 1.2 At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 29 1.2 At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 28 2.1 At1g53130.1 68414.m06016 stigma-specific Stig1 family protein si... 28 2.1 At4g34930.1 68417.m04952 1-phosphatidylinositol phosphodiesteras... 27 2.8 At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 27 2.8 At1g69280.1 68414.m07943 expressed protein 27 3.8 At3g62680.1 68416.m07041 proline-rich family protein contains pr... 27 5.0 At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (... 26 6.6 At1g31990.1 68414.m03934 expressed protein 26 6.6 At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 26 8.7 At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom... 26 8.7 >At5g14920.1 68418.m01750 gibberellin-regulated family protein similar to SP|P46689 Gibberellin-regulated protein 1 precursor {Arabidopsis thaliana}; contains Pfam profile PF02704: Gibberellin regulated protein Length = 275 Score = 37.9 bits (84), Expect = 0.002 Identities = 28/86 (32%), Positives = 33/86 (38%) Frame = +1 Query: 22 PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQT 201 P V Y PP PV + T PV P T P V Y+PP PV A Sbjct: 150 PPVQPPTYKPPTSPV---KPPTTTPPVKPPT-----TTPPVQPPTYNPPTTPVKPPTAPP 201 Query: 202 WQDPVHPAVAALMDTVPTW*WKCIIH 279 + P P V +D VP +C H Sbjct: 202 VKPPTPPPVRTRIDCVPLCGTRCGQH 227 Score = 31.5 bits (68), Expect = 0.17 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = +1 Query: 16 TVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVP 138 T P V Y+PP PV A ++ P P V +D VP Sbjct: 178 TTPPVQPPTYNPPTTPVKPPTAPPVKPPTPPPVRTRIDCVP 218 Score = 28.7 bits (61), Expect = 1.2 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Frame = +1 Query: 43 YHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTV-VMEVYHPPAVPVT 183 Y PP +P T ++ T + PV P + P V + PP P T Sbjct: 59 YKPPTLPTTPIKPPTTKPPVKPPTIPVTPVKPPVSTPPIKLPPVQPPT 106 >At1g54970.1 68414.m06278 proline-rich family protein similar to proline-rich protein GI:170048 from [Glycine max] Length = 335 Score = 34.3 bits (75), Expect = 0.025 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Frame = +1 Query: 22 PTVVMEVYHPPAVPVTLMQAQTLQDPVH-PAVAALMDTVPTVVMEVYHPPAVPVTLMQAQ 198 PT+ VY PP TL PVH P ++ + T PT+ Y PP + A Sbjct: 40 PTLPPPVYTPPVHKPTL-PPPVYTPPVHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLPAP 98 Query: 199 TWQDPVH-PAVAALMDTVPT 255 + PV+ P ++ + T PT Sbjct: 99 VYTPPVYKPTLSPPVYTKPT 118 Score = 27.5 bits (58), Expect = 2.8 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%) Frame = +1 Query: 22 PTVVMEVYHPPAVPVTLMQA----QTLQDPVH-PAVAALMDTVPTVVMEVYHPPAVPVTL 186 PT+ VY PP TL TL PV P ++ + T PT+ VY P P + Sbjct: 93 PTLPAPVYTPPVYKPTLSPPVYTKPTLLPPVFKPTLSPPVYTKPTLSPTVYKPTLSP-PV 151 Query: 187 MQAQTWQDPVH-PAVAALMDTVPT 255 + PV+ P ++ + T PT Sbjct: 152 NNKPSLSPPVYKPTLSPPVYTKPT 175 >At2g27380.1 68415.m03302 proline-rich family protein contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 761 Score = 30.7 bits (66), Expect = 0.30 Identities = 16/61 (26%), Positives = 26/61 (42%) Frame = +1 Query: 40 VYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVH 219 +Y PP P + + T P++P T PT +Y P P+ T+ P++ Sbjct: 62 IYSPPIYPPPIQKPPTYSPPIYPPPIQKPPT-PTYSPPIYPP---PIQKPPTPTYSPPIY 117 Query: 220 P 222 P Sbjct: 118 P 118 >At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin family protein similar to arabinogalactan protein [Daucus carota] GI:11322245; contains Pfam profile PF01190: Pollen proteins Ole e I family Length = 359 Score = 29.9 bits (64), Expect = 0.53 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Frame = +1 Query: 22 PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALM--DTVPTVVMEVYHPPAVPVTLMQA 195 P V VY P PV ++ PV+P A + T P V VY P PV Sbjct: 118 PPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTK 177 Query: 196 QTWQDPVHP 222 + PV P Sbjct: 178 PPVKPPVSP 186 Score = 27.5 bits (58), Expect = 2.8 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 2/74 (2%) Frame = +1 Query: 16 TVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALM--DTVPTVVMEVYHPPAVPVTLM 189 T P V VY P PV ++ PV+P A + T P V V P PV Sbjct: 136 TKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKPPVSPPAKPPVKPP 195 Query: 190 QAQTWQDPVHPAVA 231 + PV P V+ Sbjct: 196 VYPPTKAPVKPPVS 209 Score = 25.8 bits (54), Expect = 8.7 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Frame = +1 Query: 49 PPAVPVTLMQAQTLQDPVHPAVAALMD--TVPTVVMEVYHPPAVPVTLMQAQTWQDPVHP 222 P PV+ ++ PV+P A + T P V VY P PV + PV+P Sbjct: 107 PVKPPVSPPAKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKPPVYP 166 Query: 223 AVAA 234 A Sbjct: 167 PTKA 170 >At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19) non-consensus splice site at the intron:exon boundary (AT:exon) Length = 247 Score = 29.5 bits (63), Expect = 0.70 Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Frame = +1 Query: 49 PPAVPVT-LMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVHPA 225 P A PVT A P AA T T + PPA PVT A T P P Sbjct: 27 PAASPVTSTTTAPPPTTAAPPTTAAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPK 86 Query: 226 VAALM 240 VA ++ Sbjct: 87 VAPVI 91 Score = 28.3 bits (60), Expect = 1.6 Identities = 20/62 (32%), Positives = 24/62 (38%) Frame = +1 Query: 1 AALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPV 180 AA T T + PPA PVT A T P P VA ++ PPA Sbjct: 50 AAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQSPPASAP 109 Query: 181 TL 186 T+ Sbjct: 110 TV 111 >At3g61670.1 68416.m06911 expressed protein weak similarity to extra-large G-protein [Arabidopsis thaliana] GI:3201682 Length = 790 Score = 28.7 bits (61), Expect = 1.2 Identities = 10/20 (50%), Positives = 11/20 (55%) Frame = -3 Query: 156 HFHHDCRNCIHKCCYRRMYW 97 HFHH +C H CY YW Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339 >At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein similar to hect domain and RLD 2 GB:NP_004658 [Homo sapiens]; contains Pfam PF00415: Regulator of chromosome condensation (RCC1); contains Pfam PF00023: Ankyrin repeat; similar to rjs (GI:3414809) [Mus musculus]; similar to HERC2 (GI:4079809) [Homo sapiens] Length = 1081 Score = 28.7 bits (61), Expect = 1.2 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +1 Query: 4 ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQ 93 A+ +T VV +YHP P+ L ++QTLQ Sbjct: 497 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 526 >At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein similar to hect domain and RLD 2 GB:NP_004658 [Homo sapiens]; contains Pfam PF00415: Regulator of chromosome condensation (RCC1); contains Pfam PF00023: Ankyrin repeat; similar to rjs (GI:3414809) [Mus musculus]; similar to HERC2 (GI:4079809) [Homo sapiens] Length = 1078 Score = 28.7 bits (61), Expect = 1.2 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +1 Query: 4 ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQ 93 A+ +T VV +YHP P+ L ++QTLQ Sbjct: 494 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 523 >At3g19430.1 68416.m02464 late embryogenesis abundant protein-related / LEA protein-related similar to late embryogenesis abundant protein [Picea glauca] GI:1350543 Length = 559 Score = 27.9 bits (59), Expect = 2.1 Identities = 19/69 (27%), Positives = 27/69 (39%) Frame = +1 Query: 16 TVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQA 195 +VP+ V PP P + + T PV P +VP+ V PP P + + Sbjct: 107 SVPSPTPPVSPPPPTPTPSVPSPT--PPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPS 164 Query: 196 QTWQDPVHP 222 T P P Sbjct: 165 PTPPVPTDP 173 >At1g53130.1 68414.m06016 stigma-specific Stig1 family protein similar to stigma-specific protein STIG1 [Nicotiana tabacum] GI:496647; contains Pfam profile PF04885: Stigma-specific protein, Stig1 Length = 168 Score = 27.9 bits (59), Expect = 2.1 Identities = 17/63 (26%), Positives = 25/63 (39%) Frame = -3 Query: 192 LHQCYWNCRWMIHFHHDCRNCIHKCCYRRMYWIL*GLCLHQCYWNCRWMIHFHHDCWNCI 13 LH C +CR ++ ++C C HKC G C C ++ + C C Sbjct: 102 LHCCKKHCRNVLGDRNNCGRCGHKC----------GFGQRCCGGVCTYVNFNPNHCGKCT 151 Query: 12 HKC 4 KC Sbjct: 152 RKC 154 >At4g34930.1 68417.m04952 1-phosphatidylinositol phosphodiesterase-related contains weak similarity to 1-phosphatidylinositol phosphodiesterase precursor (EC 4.6.1.13) (Phosphatidylinositol diacylglycerol-lyase) (Phosphatidylinositol- specific phospholipase C) (PI-PLC). (Swiss-Prot:P34024) [Listeria monocytogenes] Length = 391 Score = 27.5 bits (58), Expect = 2.8 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +1 Query: 13 DTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHP 165 D+ +VV EV +P +++ V+P V+ D+ TVV +V +P Sbjct: 17 DSAKSVVEEVVNPTVSFANNSARTVVEEVVNPTVSFANDSARTVVEKVLNP 67 >At1g12040.1 68414.m01390 leucine-rich repeat family protein / extensin family protein (LRX1) similar to extensin-like protein [Lycopersicon esculentum] gi|5917664|gb|AAD55979; contains leucine-rich repeats, Pfam:PF00560; contains proline rich extensin domains, INTERPRO:IPR002965 Length = 744 Score = 27.5 bits (58), Expect = 2.8 Identities = 16/59 (27%), Positives = 21/59 (35%) Frame = +1 Query: 49 PPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVHPA 225 PP PV Q P P + P VY+PP P + + PV P+ Sbjct: 598 PPPSPVYYPQVTPSPPPPSPLYYPPVTPSPPPPSPVYYPPVTPSPPPPSPVYYPPVTPS 656 >At1g69280.1 68414.m07943 expressed protein Length = 400 Score = 27.1 bits (57), Expect = 3.8 Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 7/34 (20%) Frame = -3 Query: 81 CLHQCYW-------NCRWMIHFHHDCWNCIHKCC 1 C C W +C W+ H CW+C CC Sbjct: 335 CFSWCRWPSCDYNSSCGWLFCCHWSCWSCC--CC 366 >At3g62680.1 68416.m07041 proline-rich family protein contains proline-rich region, INTERPRO:IPR000694 Length = 313 Score = 26.6 bits (56), Expect = 5.0 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 11/79 (13%) Frame = +1 Query: 16 TVPTVVMEVYHPPAVPVT----LMQAQTLQDPVH------PAVAALMDTVPTVVMEVYHP 165 T PT+ VY PP T + T+ PV+ P ++ + T PT+ VY P Sbjct: 62 TKPTIPPPVYTPPVYKHTPSPPVYTKPTIPPPVYTPPVYKPTLSPPVYTKPTIPPPVYTP 121 Query: 166 PAV-PVTLMQAQTWQDPVH 219 P P + T PV+ Sbjct: 122 PVYKPTPVYTKPTIPPPVY 140 Score = 26.2 bits (55), Expect = 6.6 Identities = 19/69 (27%), Positives = 26/69 (37%) Frame = +1 Query: 22 PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQT 201 PT+ VY P +P + + P V T PT+ VY PP TL Sbjct: 54 PTLSPPVYTKPTIPPPVYTPPVYKHTPSPPVY----TKPTIPPPVYTPPVYKPTLSPPVY 109 Query: 202 WQDPVHPAV 228 + + P V Sbjct: 110 TKPTIPPPV 118 >At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm) identical to ataxia-telangiectasia mutated protein (Atm) [Arabidopsis thaliana] GI:7529272; contains Pfam profile PF00855: PWWP domain; contains GA donor splice site at exon 73 Length = 3255 Score = 26.2 bits (55), Expect = 6.6 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = -3 Query: 216 YWILPGLCLHQCYWNCRWM 160 +W+LP L LH+ + N W+ Sbjct: 2015 HWLLPALLLHEDHTNLDWV 2033 >At1g31990.1 68414.m03934 expressed protein Length = 325 Score = 26.2 bits (55), Expect = 6.6 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -1 Query: 308 CLHQCYXNCRWMIHF-HHHVGTVSISAATAG 219 CL Q Y + H HHH+ VSIS + G Sbjct: 22 CLSQIYFPDSLLSHSTHHHINLVSISQSHVG 52 >At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein similar to chitinase, class V GI:505267 from [Nicotiana tabacum] Length = 365 Score = 25.8 bits (54), Expect = 8.7 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +1 Query: 109 AVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVHPA 225 A+A +D V + + Y P PVT A + DP +PA Sbjct: 191 AIADNLDFVNIMAYDFYGPGWSPVTGPPAALFHDPSNPA 229 >At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) domain-containing protein contains Pfam domain, PF02373: jmjC domain; non-consensus TG acceptor splice site at exon boundary 79262 Length = 880 Score = 25.8 bits (54), Expect = 8.7 Identities = 9/31 (29%), Positives = 15/31 (48%) Frame = -1 Query: 266 FHHHVGTVSISAATAGCTGSCQVCACISVTG 174 ++ H+ T I C G+C C C+ +G Sbjct: 223 WYPHLSTDDILEKCPFCRGTCNCCTCLHSSG 253 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,585,589 Number of Sequences: 28952 Number of extensions: 122477 Number of successful extensions: 329 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 243 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 324 length of database: 12,070,560 effective HSP length: 72 effective length of database: 9,986,016 effective search space used: 469342752 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -