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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0980.Seq
         (359 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    38   0.002
At1g54970.1 68414.m06278 proline-rich family protein similar to ...    34   0.025
At2g27380.1 68415.m03302 proline-rich family protein contains pr...    31   0.30 
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa...    30   0.53 
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    29   0.70 
At3g61670.1 68416.m06911 expressed protein weak similarity to ex...    29   1.2  
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat...    29   1.2  
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat...    29   1.2  
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    28   2.1  
At1g53130.1 68414.m06016 stigma-specific Stig1 family protein si...    28   2.1  
At4g34930.1 68417.m04952 1-phosphatidylinositol phosphodiesteras...    27   2.8  
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex...    27   2.8  
At1g69280.1 68414.m07943 expressed protein                             27   3.8  
At3g62680.1 68416.m07041 proline-rich family protein contains pr...    27   5.0  
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    26   6.6  
At1g31990.1 68414.m03934 expressed protein                             26   6.6  
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si...    26   8.7  
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom...    26   8.7  

>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 28/86 (32%), Positives = 33/86 (38%)
 Frame = +1

Query: 22  PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQT 201
           P V    Y PP  PV   +  T   PV P       T P V    Y+PP  PV    A  
Sbjct: 150 PPVQPPTYKPPTSPV---KPPTTTPPVKPPT-----TTPPVQPPTYNPPTTPVKPPTAPP 201

Query: 202 WQDPVHPAVAALMDTVPTW*WKCIIH 279
            + P  P V   +D VP    +C  H
Sbjct: 202 VKPPTPPPVRTRIDCVPLCGTRCGQH 227



 Score = 31.5 bits (68), Expect = 0.17
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 16  TVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVP 138
           T P V    Y+PP  PV    A  ++ P  P V   +D VP
Sbjct: 178 TTPPVQPPTYNPPTTPVKPPTAPPVKPPTPPPVRTRIDCVP 218



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +1

Query: 43  YHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTV-VMEVYHPPAVPVT 183
           Y PP +P T ++  T + PV P    +    P V    +  PP  P T
Sbjct: 59  YKPPTLPTTPIKPPTTKPPVKPPTIPVTPVKPPVSTPPIKLPPVQPPT 106


>At1g54970.1 68414.m06278 proline-rich family protein similar to
           proline-rich protein GI:170048 from [Glycine max]
          Length = 335

 Score = 34.3 bits (75), Expect = 0.025
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +1

Query: 22  PTVVMEVYHPPAVPVTLMQAQTLQDPVH-PAVAALMDTVPTVVMEVYHPPAVPVTLMQAQ 198
           PT+   VY PP    TL        PVH P ++  + T PT+    Y PP      + A 
Sbjct: 40  PTLPPPVYTPPVHKPTL-PPPVYTPPVHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLPAP 98

Query: 199 TWQDPVH-PAVAALMDTVPT 255
            +  PV+ P ++  + T PT
Sbjct: 99  VYTPPVYKPTLSPPVYTKPT 118



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
 Frame = +1

Query: 22  PTVVMEVYHPPAVPVTLMQA----QTLQDPVH-PAVAALMDTVPTVVMEVYHPPAVPVTL 186
           PT+   VY PP    TL        TL  PV  P ++  + T PT+   VY P   P  +
Sbjct: 93  PTLPAPVYTPPVYKPTLSPPVYTKPTLLPPVFKPTLSPPVYTKPTLSPTVYKPTLSP-PV 151

Query: 187 MQAQTWQDPVH-PAVAALMDTVPT 255
               +   PV+ P ++  + T PT
Sbjct: 152 NNKPSLSPPVYKPTLSPPVYTKPT 175


>At2g27380.1 68415.m03302 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 761

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +1

Query: 40  VYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVH 219
           +Y PP  P  + +  T   P++P       T PT    +Y P   P+      T+  P++
Sbjct: 62  IYSPPIYPPPIQKPPTYSPPIYPPPIQKPPT-PTYSPPIYPP---PIQKPPTPTYSPPIY 117

Query: 220 P 222
           P
Sbjct: 118 P 118


>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
           family protein similar to arabinogalactan protein
           [Daucus carota] GI:11322245; contains Pfam profile
           PF01190: Pollen proteins Ole e I family
          Length = 359

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
 Frame = +1

Query: 22  PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALM--DTVPTVVMEVYHPPAVPVTLMQA 195
           P V   VY P   PV       ++ PV+P   A +   T P V   VY P   PV     
Sbjct: 118 PPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTK 177

Query: 196 QTWQDPVHP 222
              + PV P
Sbjct: 178 PPVKPPVSP 186



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
 Frame = +1

Query: 16  TVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALM--DTVPTVVMEVYHPPAVPVTLM 189
           T P V   VY P   PV       ++ PV+P   A +   T P V   V  P   PV   
Sbjct: 136 TKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKPPVSPPAKPPVKPP 195

Query: 190 QAQTWQDPVHPAVA 231
                + PV P V+
Sbjct: 196 VYPPTKAPVKPPVS 209



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = +1

Query: 49  PPAVPVTLMQAQTLQDPVHPAVAALMD--TVPTVVMEVYHPPAVPVTLMQAQTWQDPVHP 222
           P   PV+      ++ PV+P   A +   T P V   VY P   PV        + PV+P
Sbjct: 107 PVKPPVSPPAKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKPPVYP 166

Query: 223 AVAA 234
              A
Sbjct: 167 PTKA 170


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = +1

Query: 49  PPAVPVT-LMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVHPA 225
           P A PVT    A        P  AA   T  T  +    PPA PVT   A T   P  P 
Sbjct: 27  PAASPVTSTTTAPPPTTAAPPTTAAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPK 86

Query: 226 VAALM 240
           VA ++
Sbjct: 87  VAPVI 91



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/62 (32%), Positives = 24/62 (38%)
 Frame = +1

Query: 1   AALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPV 180
           AA   T  T  +    PPA PVT   A T   P  P VA ++            PPA   
Sbjct: 50  AAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQSPPASAP 109

Query: 181 TL 186
           T+
Sbjct: 110 TV 111


>At3g61670.1 68416.m06911 expressed protein weak similarity to
           extra-large G-protein [Arabidopsis thaliana] GI:3201682
          Length = 790

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 156 HFHHDCRNCIHKCCYRRMYW 97
           HFHH   +C H  CY   YW
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339


>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
           of chromosome condensation (RCC1) family protein similar
           to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
           contains Pfam PF00415: Regulator of chromosome
           condensation (RCC1); contains Pfam PF00023: Ankyrin
           repeat; similar to rjs (GI:3414809) [Mus musculus];
           similar to  HERC2 (GI:4079809) [Homo sapiens]
          Length = 1081

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 4   ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQ 93
           A+ +T   VV  +YHP   P+ L ++QTLQ
Sbjct: 497 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 526


>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
           of chromosome condensation (RCC1) family protein similar
           to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
           contains Pfam PF00415: Regulator of chromosome
           condensation (RCC1); contains Pfam PF00023: Ankyrin
           repeat; similar to rjs (GI:3414809) [Mus musculus];
           similar to  HERC2 (GI:4079809) [Homo sapiens]
          Length = 1078

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 4   ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQ 93
           A+ +T   VV  +YHP   P+ L ++QTLQ
Sbjct: 494 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 523


>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/69 (27%), Positives = 27/69 (39%)
 Frame = +1

Query: 16  TVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQA 195
           +VP+    V  PP  P   + + T   PV P       +VP+    V  PP  P   + +
Sbjct: 107 SVPSPTPPVSPPPPTPTPSVPSPT--PPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPS 164

Query: 196 QTWQDPVHP 222
            T   P  P
Sbjct: 165 PTPPVPTDP 173


>At1g53130.1 68414.m06016 stigma-specific Stig1 family protein
           similar to stigma-specific protein STIG1 [Nicotiana
           tabacum] GI:496647; contains Pfam profile PF04885:
           Stigma-specific protein, Stig1
          Length = 168

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = -3

Query: 192 LHQCYWNCRWMIHFHHDCRNCIHKCCYRRMYWIL*GLCLHQCYWNCRWMIHFHHDCWNCI 13
           LH C  +CR ++   ++C  C HKC          G     C   C ++    + C  C 
Sbjct: 102 LHCCKKHCRNVLGDRNNCGRCGHKC----------GFGQRCCGGVCTYVNFNPNHCGKCT 151

Query: 12  HKC 4
            KC
Sbjct: 152 RKC 154


>At4g34930.1 68417.m04952 1-phosphatidylinositol
           phosphodiesterase-related contains weak similarity to
           1-phosphatidylinositol phosphodiesterase precursor (EC
           4.6.1.13) (Phosphatidylinositol diacylglycerol-lyase)
           (Phosphatidylinositol- specific phospholipase C)
           (PI-PLC). (Swiss-Prot:P34024) [Listeria monocytogenes]
          Length = 391

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 13  DTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHP 165
           D+  +VV EV +P            +++ V+P V+   D+  TVV +V +P
Sbjct: 17  DSAKSVVEEVVNPTVSFANNSARTVVEEVVNPTVSFANDSARTVVEKVLNP 67


>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
           extensin family protein (LRX1) similar to extensin-like
           protein [Lycopersicon esculentum]
           gi|5917664|gb|AAD55979; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 744

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/59 (27%), Positives = 21/59 (35%)
 Frame = +1

Query: 49  PPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVHPA 225
           PP  PV   Q      P  P     +   P     VY+PP  P     +  +  PV P+
Sbjct: 598 PPPSPVYYPQVTPSPPPPSPLYYPPVTPSPPPPSPVYYPPVTPSPPPPSPVYYPPVTPS 656


>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 7/34 (20%)
 Frame = -3

Query: 81  CLHQCYW-------NCRWMIHFHHDCWNCIHKCC 1
           C   C W       +C W+   H  CW+C   CC
Sbjct: 335 CFSWCRWPSCDYNSSCGWLFCCHWSCWSCC--CC 366


>At3g62680.1 68416.m07041 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 313

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
 Frame = +1

Query: 16  TVPTVVMEVYHPPAVPVT----LMQAQTLQDPVH------PAVAALMDTVPTVVMEVYHP 165
           T PT+   VY PP    T    +    T+  PV+      P ++  + T PT+   VY P
Sbjct: 62  TKPTIPPPVYTPPVYKHTPSPPVYTKPTIPPPVYTPPVYKPTLSPPVYTKPTIPPPVYTP 121

Query: 166 PAV-PVTLMQAQTWQDPVH 219
           P   P  +    T   PV+
Sbjct: 122 PVYKPTPVYTKPTIPPPVY 140



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 19/69 (27%), Positives = 26/69 (37%)
 Frame = +1

Query: 22  PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQT 201
           PT+   VY  P +P  +      +    P V     T PT+   VY PP    TL     
Sbjct: 54  PTLSPPVYTKPTIPPPVYTPPVYKHTPSPPVY----TKPTIPPPVYTPPVYKPTLSPPVY 109

Query: 202 WQDPVHPAV 228
            +  + P V
Sbjct: 110 TKPTIPPPV 118


>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
            identical to ataxia-telangiectasia mutated protein (Atm)
            [Arabidopsis thaliana] GI:7529272; contains Pfam profile
            PF00855: PWWP domain; contains GA donor splice site at
            exon 73
          Length = 3255

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 216  YWILPGLCLHQCYWNCRWM 160
            +W+LP L LH+ + N  W+
Sbjct: 2015 HWLLPALLLHEDHTNLDWV 2033


>At1g31990.1 68414.m03934 expressed protein
          Length = 325

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 308 CLHQCYXNCRWMIHF-HHHVGTVSISAATAG 219
           CL Q Y     + H  HHH+  VSIS +  G
Sbjct: 22  CLSQIYFPDSLLSHSTHHHINLVSISQSHVG 52


>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:505267 from [Nicotiana
           tabacum]
          Length = 365

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 109 AVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVHPA 225
           A+A  +D V  +  + Y P   PVT   A  + DP +PA
Sbjct: 191 AIADNLDFVNIMAYDFYGPGWSPVTGPPAALFHDPSNPA 229


>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain; non-consensus TG acceptor splice site at
           exon boundary 79262
          Length = 880

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 266 FHHHVGTVSISAATAGCTGSCQVCACISVTG 174
           ++ H+ T  I      C G+C  C C+  +G
Sbjct: 223 WYPHLSTDDILEKCPFCRGTCNCCTCLHSSG 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,585,589
Number of Sequences: 28952
Number of extensions: 122477
Number of successful extensions: 329
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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