Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0980.Seq
(359 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 38 0.002
At1g54970.1 68414.m06278 proline-rich family protein similar to ... 34 0.025
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 31 0.30
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 30 0.53
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 29 0.70
At3g61670.1 68416.m06911 expressed protein weak similarity to ex... 29 1.2
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 29 1.2
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 29 1.2
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 28 2.1
At1g53130.1 68414.m06016 stigma-specific Stig1 family protein si... 28 2.1
At4g34930.1 68417.m04952 1-phosphatidylinositol phosphodiesteras... 27 2.8
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 27 2.8
At1g69280.1 68414.m07943 expressed protein 27 3.8
At3g62680.1 68416.m07041 proline-rich family protein contains pr... 27 5.0
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (... 26 6.6
At1g31990.1 68414.m03934 expressed protein 26 6.6
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 26 8.7
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom... 26 8.7
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 37.9 bits (84), Expect = 0.002
Identities = 28/86 (32%), Positives = 33/86 (38%)
Frame = +1
Query: 22 PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQT 201
P V Y PP PV + T PV P T P V Y+PP PV A
Sbjct: 150 PPVQPPTYKPPTSPV---KPPTTTPPVKPPT-----TTPPVQPPTYNPPTTPVKPPTAPP 201
Query: 202 WQDPVHPAVAALMDTVPTW*WKCIIH 279
+ P P V +D VP +C H
Sbjct: 202 VKPPTPPPVRTRIDCVPLCGTRCGQH 227
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 16 TVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVP 138
T P V Y+PP PV A ++ P P V +D VP
Sbjct: 178 TTPPVQPPTYNPPTTPVKPPTAPPVKPPTPPPVRTRIDCVP 218
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 43 YHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTV-VMEVYHPPAVPVT 183
Y PP +P T ++ T + PV P + P V + PP P T
Sbjct: 59 YKPPTLPTTPIKPPTTKPPVKPPTIPVTPVKPPVSTPPIKLPPVQPPT 106
>At1g54970.1 68414.m06278 proline-rich family protein similar to
proline-rich protein GI:170048 from [Glycine max]
Length = 335
Score = 34.3 bits (75), Expect = 0.025
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +1
Query: 22 PTVVMEVYHPPAVPVTLMQAQTLQDPVH-PAVAALMDTVPTVVMEVYHPPAVPVTLMQAQ 198
PT+ VY PP TL PVH P ++ + T PT+ Y PP + A
Sbjct: 40 PTLPPPVYTPPVHKPTL-PPPVYTPPVHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLPAP 98
Query: 199 TWQDPVH-PAVAALMDTVPT 255
+ PV+ P ++ + T PT
Sbjct: 99 VYTPPVYKPTLSPPVYTKPT 118
Score = 27.5 bits (58), Expect = 2.8
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = +1
Query: 22 PTVVMEVYHPPAVPVTLMQA----QTLQDPVH-PAVAALMDTVPTVVMEVYHPPAVPVTL 186
PT+ VY PP TL TL PV P ++ + T PT+ VY P P +
Sbjct: 93 PTLPAPVYTPPVYKPTLSPPVYTKPTLLPPVFKPTLSPPVYTKPTLSPTVYKPTLSP-PV 151
Query: 187 MQAQTWQDPVH-PAVAALMDTVPT 255
+ PV+ P ++ + T PT
Sbjct: 152 NNKPSLSPPVYKPTLSPPVYTKPT 175
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 30.7 bits (66), Expect = 0.30
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +1
Query: 40 VYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVH 219
+Y PP P + + T P++P T PT +Y P P+ T+ P++
Sbjct: 62 IYSPPIYPPPIQKPPTYSPPIYPPPIQKPPT-PTYSPPIYPP---PIQKPPTPTYSPPIY 117
Query: 220 P 222
P
Sbjct: 118 P 118
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 29.9 bits (64), Expect = 0.53
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Frame = +1
Query: 22 PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALM--DTVPTVVMEVYHPPAVPVTLMQA 195
P V VY P PV ++ PV+P A + T P V VY P PV
Sbjct: 118 PPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTK 177
Query: 196 QTWQDPVHP 222
+ PV P
Sbjct: 178 PPVKPPVSP 186
Score = 27.5 bits (58), Expect = 2.8
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = +1
Query: 16 TVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALM--DTVPTVVMEVYHPPAVPVTLM 189
T P V VY P PV ++ PV+P A + T P V V P PV
Sbjct: 136 TKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKPPVSPPAKPPVKPP 195
Query: 190 QAQTWQDPVHPAVA 231
+ PV P V+
Sbjct: 196 VYPPTKAPVKPPVS 209
Score = 25.8 bits (54), Expect = 8.7
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +1
Query: 49 PPAVPVTLMQAQTLQDPVHPAVAALMD--TVPTVVMEVYHPPAVPVTLMQAQTWQDPVHP 222
P PV+ ++ PV+P A + T P V VY P PV + PV+P
Sbjct: 107 PVKPPVSPPAKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKPPVYP 166
Query: 223 AVAA 234
A
Sbjct: 167 PTKA 170
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 29.5 bits (63), Expect = 0.70
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +1
Query: 49 PPAVPVT-LMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVHPA 225
P A PVT A P AA T T + PPA PVT A T P P
Sbjct: 27 PAASPVTSTTTAPPPTTAAPPTTAAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPK 86
Query: 226 VAALM 240
VA ++
Sbjct: 87 VAPVI 91
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/62 (32%), Positives = 24/62 (38%)
Frame = +1
Query: 1 AALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPV 180
AA T T + PPA PVT A T P P VA ++ PPA
Sbjct: 50 AAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQSPPASAP 109
Query: 181 TL 186
T+
Sbjct: 110 TV 111
>At3g61670.1 68416.m06911 expressed protein weak similarity to
extra-large G-protein [Arabidopsis thaliana] GI:3201682
Length = 790
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 156 HFHHDCRNCIHKCCYRRMYW 97
HFHH +C H CY YW
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 4 ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQ 93
A+ +T VV +YHP P+ L ++QTLQ
Sbjct: 497 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 526
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 4 ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQ 93
A+ +T VV +YHP P+ L ++QTLQ
Sbjct: 494 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 523
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/69 (27%), Positives = 27/69 (39%)
Frame = +1
Query: 16 TVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQA 195
+VP+ V PP P + + T PV P +VP+ V PP P + +
Sbjct: 107 SVPSPTPPVSPPPPTPTPSVPSPT--PPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPS 164
Query: 196 QTWQDPVHP 222
T P P
Sbjct: 165 PTPPVPTDP 173
>At1g53130.1 68414.m06016 stigma-specific Stig1 family protein
similar to stigma-specific protein STIG1 [Nicotiana
tabacum] GI:496647; contains Pfam profile PF04885:
Stigma-specific protein, Stig1
Length = 168
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = -3
Query: 192 LHQCYWNCRWMIHFHHDCRNCIHKCCYRRMYWIL*GLCLHQCYWNCRWMIHFHHDCWNCI 13
LH C +CR ++ ++C C HKC G C C ++ + C C
Sbjct: 102 LHCCKKHCRNVLGDRNNCGRCGHKC----------GFGQRCCGGVCTYVNFNPNHCGKCT 151
Query: 12 HKC 4
KC
Sbjct: 152 RKC 154
>At4g34930.1 68417.m04952 1-phosphatidylinositol
phosphodiesterase-related contains weak similarity to
1-phosphatidylinositol phosphodiesterase precursor (EC
4.6.1.13) (Phosphatidylinositol diacylglycerol-lyase)
(Phosphatidylinositol- specific phospholipase C)
(PI-PLC). (Swiss-Prot:P34024) [Listeria monocytogenes]
Length = 391
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 13 DTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHP 165
D+ +VV EV +P +++ V+P V+ D+ TVV +V +P
Sbjct: 17 DSAKSVVEEVVNPTVSFANNSARTVVEEVVNPTVSFANDSARTVVEKVLNP 67
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/59 (27%), Positives = 21/59 (35%)
Frame = +1
Query: 49 PPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVHPA 225
PP PV Q P P + P VY+PP P + + PV P+
Sbjct: 598 PPPSPVYYPQVTPSPPPPSPLYYPPVTPSPPPPSPVYYPPVTPSPPPPSPVYYPPVTPS 656
>At1g69280.1 68414.m07943 expressed protein
Length = 400
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 7/34 (20%)
Frame = -3
Query: 81 CLHQCYW-------NCRWMIHFHHDCWNCIHKCC 1
C C W +C W+ H CW+C CC
Sbjct: 335 CFSWCRWPSCDYNSSCGWLFCCHWSCWSCC--CC 366
>At3g62680.1 68416.m07041 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 313
Score = 26.6 bits (56), Expect = 5.0
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Frame = +1
Query: 16 TVPTVVMEVYHPPAVPVT----LMQAQTLQDPVH------PAVAALMDTVPTVVMEVYHP 165
T PT+ VY PP T + T+ PV+ P ++ + T PT+ VY P
Sbjct: 62 TKPTIPPPVYTPPVYKHTPSPPVYTKPTIPPPVYTPPVYKPTLSPPVYTKPTIPPPVYTP 121
Query: 166 PAV-PVTLMQAQTWQDPVH 219
P P + T PV+
Sbjct: 122 PVYKPTPVYTKPTIPPPVY 140
Score = 26.2 bits (55), Expect = 6.6
Identities = 19/69 (27%), Positives = 26/69 (37%)
Frame = +1
Query: 22 PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQT 201
PT+ VY P +P + + P V T PT+ VY PP TL
Sbjct: 54 PTLSPPVYTKPTIPPPVYTPPVYKHTPSPPVY----TKPTIPPPVYTPPVYKPTLSPPVY 109
Query: 202 WQDPVHPAV 228
+ + P V
Sbjct: 110 TKPTIPPPV 118
>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
identical to ataxia-telangiectasia mutated protein (Atm)
[Arabidopsis thaliana] GI:7529272; contains Pfam profile
PF00855: PWWP domain; contains GA donor splice site at
exon 73
Length = 3255
Score = 26.2 bits (55), Expect = 6.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 216 YWILPGLCLHQCYWNCRWM 160
+W+LP L LH+ + N W+
Sbjct: 2015 HWLLPALLLHEDHTNLDWV 2033
>At1g31990.1 68414.m03934 expressed protein
Length = 325
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 308 CLHQCYXNCRWMIHF-HHHVGTVSISAATAG 219
CL Q Y + H HHH+ VSIS + G
Sbjct: 22 CLSQIYFPDSLLSHSTHHHINLVSISQSHVG 52
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 109 AVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVHPA 225
A+A +D V + + Y P PVT A + DP +PA
Sbjct: 191 AIADNLDFVNIMAYDFYGPGWSPVTGPPAALFHDPSNPA 229
>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain; non-consensus TG acceptor splice site at
exon boundary 79262
Length = 880
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = -1
Query: 266 FHHHVGTVSISAATAGCTGSCQVCACISVTG 174
++ H+ T I C G+C C C+ +G
Sbjct: 223 WYPHLSTDDILEKCPFCRGTCNCCTCLHSSG 253
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,585,589
Number of Sequences: 28952
Number of extensions: 122477
Number of successful extensions: 329
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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