BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0979.Seq (561 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 27 1.9 SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 26 3.3 SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe... 26 4.4 SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 5.8 SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 25 7.6 SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 7.6 >SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual Length = 601 Score = 27.1 bits (57), Expect = 1.9 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +2 Query: 233 YCELFLQLSSASELVIKNHSNFRNI 307 YC+ F L S ++KNHSN N+ Sbjct: 524 YCDTFDVLVSYKRSLVKNHSNSTNL 548 >SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr 3|||Manual Length = 513 Score = 26.2 bits (55), Expect = 3.3 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = +2 Query: 29 GKITLNHAANSWVVWLGSASTISFNSVLFRW 121 GK+ +N SW W A+TI S ++W Sbjct: 46 GKVVMNKDCRSWEDWKVLATTIDKASGRWKW 76 >SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 236 Score = 25.8 bits (54), Expect = 4.4 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +1 Query: 376 FKRRTSQVLFEKSFSQKSFYENCA 447 F+R LFEK F QKSF C+ Sbjct: 4 FRRPNWSALFEKIFIQKSFLGFCS 27 >SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1427 Score = 25.4 bits (53), Expect = 5.8 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Frame = -3 Query: 541 NVF*CIILKKIA---FCTYFS-IFSISVGNFILLRPRNFRKKIFERNFFQIVPVRF 386 N F ++L+ I+ F TY S FS+ G+F+LL P + +F I+P+ F Sbjct: 123 NAFGLLLLRLISIYDFLTYSSWSFSVKGGSFLLLLPLAYNITLF---LLVIIPLFF 175 >SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Par2|Schizosaccharomyces pombe|chr 1|||Manual Length = 627 Score = 25.0 bits (52), Expect = 7.6 Identities = 11/35 (31%), Positives = 17/35 (48%) Frame = +2 Query: 356 NRMLHIFLKEEPHRYYLKKVSLKNLFTKIARTEEY 460 NR+L +F E+P L K +L ++ K Y Sbjct: 345 NRLLALFDTEDPRERELLKTTLHRIYGKFLNLRSY 379 >SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1463 Score = 25.0 bits (52), Expect = 7.6 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 192 GAFITSPLSKCNIDIASCF 248 GAF+T L CN+ IAS F Sbjct: 401 GAFVTFLLFPCNVVIASIF 419 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,355,833 Number of Sequences: 5004 Number of extensions: 48107 Number of successful extensions: 111 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 108 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 111 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 236012634 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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