Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0979.Seq
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    27   1.9  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    26   3.3  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    26   4.4  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   5.8  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   7.6  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   7.6  

>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 233 YCELFLQLSSASELVIKNHSNFRNI 307
           YC+ F  L S    ++KNHSN  N+
Sbjct: 524 YCDTFDVLVSYKRSLVKNHSNSTNL 548


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 29  GKITLNHAANSWVVWLGSASTISFNSVLFRW 121
           GK+ +N    SW  W   A+TI   S  ++W
Sbjct: 46  GKVVMNKDCRSWEDWKVLATTIDKASGRWKW 76


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 376 FKRRTSQVLFEKSFSQKSFYENCA 447
           F+R     LFEK F QKSF   C+
Sbjct: 4   FRRPNWSALFEKIFIQKSFLGFCS 27


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -3

Query: 541 NVF*CIILKKIA---FCTYFS-IFSISVGNFILLRPRNFRKKIFERNFFQIVPVRF 386
           N F  ++L+ I+   F TY S  FS+  G+F+LL P  +   +F      I+P+ F
Sbjct: 123 NAFGLLLLRLISIYDFLTYSSWSFSVKGGSFLLLLPLAYNITLF---LLVIIPLFF 175


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 356 NRMLHIFLKEEPHRYYLKKVSLKNLFTKIARTEEY 460
           NR+L +F  E+P    L K +L  ++ K      Y
Sbjct: 345 NRLLALFDTEDPRERELLKTTLHRIYGKFLNLRSY 379


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 192 GAFITSPLSKCNIDIASCF 248
           GAF+T  L  CN+ IAS F
Sbjct: 401 GAFVTFLLFPCNVVIASIF 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,833
Number of Sequences: 5004
Number of extensions: 48107
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)