Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0979.Seq
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0639 + 19505934-19506088,19506584-19506633,19508153-195088...    33   0.21 
10_08_0153 - 15240707-15241019,15241269-15241723                       30   1.5  
06_03_0752 - 24171847-24174321                                         29   1.9  
07_03_0394 - 17633753-17636788                                         29   3.4  
12_02_0752 + 22784052-22784288,22784531-22784704,22784799-227849...    28   4.4  

>10_08_0639 +
           19505934-19506088,19506584-19506633,19508153-19508893,
           19509762-19509922
          Length = 368

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 374 FLKEEPHRYYLKKVSLKNLFTKIARTEEYEISHTYREYREVXAEGNFF 517
           F+++  H + L +V ++     +AR  +Y+  H YR    + AE  FF
Sbjct: 160 FMRKARHNFRLDEVGIRRQLNMVARIIKYKDFHLYRHLEMLQAEDCFF 207


>10_08_0153 - 15240707-15241019,15241269-15241723
          Length = 255

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 53  ANSWVVWLGSASTISFNSVLFRWWVFHVVSSSNQNFHH 166
           A S+ V      T+  NSV+  WW F    +SNQ F +
Sbjct: 218 ALSFRVTSTGGQTLQINSVVPEWWEFGTTFTSNQQFDY 255


>06_03_0752 - 24171847-24174321
          Length = 824

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -3

Query: 544 FNVF*CIILKKIAFCTYFSIFSISVGNFILLRPRNFRKKI--FERNFFQIVPVR 389
           F VF C++   + + T F + ++  G ++L  PR FR ++     NFF+ +P R
Sbjct: 768 FVVF-CLVAAVVLYVTPFRVVALVAGLYLLRHPR-FRSRLPAVPSNFFRRLPSR 819


>07_03_0394 - 17633753-17636788
          Length = 1011

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -3

Query: 529  CIILKKIAFCTYFSIFSISVGNFILLRPRNFRKKIFER--NFFQIVPVR 389
            C++   I + T F + ++ +G F +  PR FR K+     NFF+ +P +
Sbjct: 959  CLLTAVILYVTPFQVIALCLGFFWMRHPR-FRHKVPSAPVNFFRRLPAK 1006


>12_02_0752 +
           22784052-22784288,22784531-22784704,22784799-22784930,
           22785062-22785439
          Length = 306

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/70 (24%), Positives = 30/70 (42%)
 Frame = -3

Query: 373 NVQHSIIDFQLLFFFLNQTRKMNIPKIRMIFDYEFRRRTKLQKQLAISMLHLERGLVMNA 194
           N Q +++D   + FF+   R +   K+    D   R+  + Q+Q         RG+  + 
Sbjct: 211 NYQGNMLDLNFIRFFVLNARVLECVKLVAAHDKYGRKWMEKQQQKLQLYGRASRGITFDF 270

Query: 193 PCDFGLNAFV 164
             D+G N  V
Sbjct: 271 QADYGSNGSV 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,315,516
Number of Sequences: 37544
Number of extensions: 277274
Number of successful extensions: 598
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)