Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0979.Seq
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44426| Best HMM Match : Lectin_legB (HMM E-Value=4.8)               28   6.0  
SB_26929| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_23384| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_44426| Best HMM Match : Lectin_legB (HMM E-Value=4.8)
          Length = 439

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 377 LKEEPHRYYL-KKVSLKNLFTKIAR-TEEYEISHTYREYRE 493
           +K  PH++YL KK+ +K L   +AR  EE+    T R   E
Sbjct: 271 IKSSPHKFYLYKKMDIKALQQDMARAAEEFSRHCTERSLEE 311


>SB_26929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -3

Query: 313 KMNIPKIRMIFDYEFRRRTKLQKQLAISMLHLERGLVMN 197
           K +I   RM  DY  RR+ K +K++  ++   +RGL +N
Sbjct: 72  KSSIQPSRMDQDYSIRRQQKDKKEITPNLPRTKRGLRIN 110


>SB_23384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +3

Query: 75  SDRLPPSLSIQCYSDGGSSTWLVLQIKISITKAFKPKSHGAFITSPLS 218
           SD +P SL + C SDG  ST +V +     +  F P S G  I+SP +
Sbjct: 11  SDDIPSSL-VACESDGIPSTLVVCEFNGIPSPLFAPVSDG--ISSPFT 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,575,703
Number of Sequences: 59808
Number of extensions: 317204
Number of successful extensions: 950
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)