Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0979.Seq
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51570.1 68414.m05804 C2 domain-containing protein contains I...    31   0.40 
At3g57880.1 68416.m06452 C2 domain-containing protein contains I...    31   0.53 
At3g59150.1 68416.m06594 F-box family protein contains F-box dom...    29   2.8  
At5g12970.1 68418.m01487 C2 domain-containing protein contains I...    28   3.7  
At4g30040.1 68417.m04274 aspartyl protease family contains Pfam ...    28   4.9  
At3g30240.1 68416.m03821 hypothetical protein                          28   4.9  
At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containi...    28   4.9  
At3g49350.1 68416.m05395 RabGAP/TBC domain-containing protein si...    27   6.5  

>At1g51570.1 68414.m05804 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 776

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 529 CIILKKIAFCTYFSIFSISVGNFILLRPR-NFRKKIFERNFFQIVPVR 389
           C+I   I + T F + + ++G ++L  PR  ++      NFF+ +P R
Sbjct: 724 CLIAAVILYITPFQVVAFAIGLYVLRHPRLRYKLPSVPLNFFRRLPAR 771


>At3g57880.1 68416.m06452 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 773

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -3

Query: 529 CIILKKIAFCTYFSIFSISVGNFILLRPRNFRKKI--FERNFFQIVPVR 389
           C+I   I + T F + ++ +G + L  PR FR K+     NFF+ +P R
Sbjct: 721 CLIAAVILYVTPFQVVALCIGIYALRHPR-FRYKLPSVPLNFFRRLPAR 768


>At3g59150.1 68416.m06594 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 509

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 47  HAANSWVVWLGSASTISFNSVLFR 118
           H +N W  W GSAS+ +  S+++R
Sbjct: 238 HESNKWKFWNGSASSRTLKSLVYR 261


>At5g12970.1 68418.m01487 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 769

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 529 CIILKKIAFCTYFSIFSISVGNFILLRPRNFRKKI--FERNFFQIVPVR 389
           C+I   + + T F + ++  G ++L  PR FR K+     N F+ +P R
Sbjct: 717 CLIAAIVLYVTPFQVVALLAGIYVLRHPR-FRHKLPSVPLNLFRRLPAR 764


>At4g30040.1 68417.m04274 aspartyl protease family contains Pfam
           domain, PF00026: eukaryotic aspartyl protease
          Length = 427

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 368 HIFLKEEPHRYYLKKVSLKNLFTKIARTEEYEISH 472
           HI+ ++ PH Y++K+ S++ L    A+T    I+H
Sbjct: 39  HIYSRKPPHVYHIKEASVERLEYLKAKTTGDIIAH 73


>At3g30240.1 68416.m03821 hypothetical protein
          Length = 189

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 419 EKLFSNSTCEVLLLKKCATFDYRLSVAFFFFKPDKK 312
           E +FS+  CE L L++  T D  L  A +F K +++
Sbjct: 141 ELMFSSRFCEELTLRQPVTLDDALHKALYFAKAEEE 176


>At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 427

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 58  FLGSLARIGFHHLFQFSVIQMVGLPRG*FFKSKFPSRKRLNQNRTVRSLPVPF-PNATLI 234
           FLGS+ R     +   S I    LP   F  S+F +   L Q+R   S+P  F P+  + 
Sbjct: 8   FLGSIFRTAKARIL-ISPIARRSLPSPNFTSSRFHTSSSLRQSRIEGSIPRSFLPSIHVR 66

Query: 235 LRAVSAA 255
             +VSA+
Sbjct: 67  FHSVSAS 73


>At3g49350.1 68416.m05395 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 554

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +2

Query: 374 FLKEEPHRYYLKKVSLKNLFTKIARTEEYEISHTYREYREVXAEGNFF 517
           F+K+  H + L +V ++     +++  + + S  YR   ++ AE  FF
Sbjct: 391 FMKKARHNFRLDEVGIRRQLNIVSKIIKSKDSQLYRHLEKLQAEDCFF 438


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,004,635
Number of Sequences: 28952
Number of extensions: 241969
Number of successful extensions: 566
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)