Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0978.Seq
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   115   4e-27
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    28   0.82 
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   4.4  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   5.8  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  115 bits (277), Expect = 4e-27
 Identities = 52/80 (65%), Positives = 65/80 (81%)
 Frame = +1

Query: 271 DSHFTHLAWINTPRKQGGLGPMNIPLISDKXHRIXRDYGVLDEETGIPFRGLFIIDDKQN 450
           DS ++HLA+INTPRK+GGLG +NIPL++D  H++ RDYGVL E+ G+ FRGLF+ID K  
Sbjct: 75  DSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFRGLFLIDPKGV 134

Query: 451 LXLITINDLPVXRSVEETLR 510
           L  ITINDLPV RSV+E LR
Sbjct: 135 LRQITINDLPVGRSVDEALR 154



 Score = 98.7 bits (235), Expect = 5e-22
 Identities = 44/62 (70%), Positives = 51/62 (82%)
 Frame = +3

Query: 51  MPLQMTKPAPQFKATXVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 230
           M LQ+ KPAP FK T VVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A 
Sbjct: 1   MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60

Query: 231 EF 236
           +F
Sbjct: 61  KF 62


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 312 QAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPXADHDQRP 476
           +A R+  H H +   +   H  R  S   G  HS   +LH   QA+P A   ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 72  PAPQFKATXVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 203
           P P F+     +G+F   S +  K K V L  YP   TF   TE
Sbjct: 271 PEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 27  SKVFSFNKMPLQMTKPAPQFKATXVVN 107
           S +FSFN      TKP+P   +T   N
Sbjct: 467 SSIFSFNAPSAASTKPSPAVSSTFSFN 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,776,733
Number of Sequences: 5004
Number of extensions: 27929
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)