Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0978.Seq
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 85 5e-17
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 43 1e-04
06_01_0671 - 4899611-4899829,4900870-4901448 42 3e-04
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 38 0.007
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 36 0.017
02_05_1121 + 34262019-34262040,34262144-34262211,34262909-342630... 33 0.16
06_03_1028 - 27004229-27004566,27005554-27005772,27006254-270063... 31 0.63
01_01_0288 - 2373764-2373923,2374016-2374398,2375426-2375710 29 1.9
01_03_0105 + 12604125-12604583 29 2.5
07_03_1139 + 24254662-24255306 29 3.4
07_01_0478 - 3605306-3605614,3605766-3605906 28 4.4
06_03_0736 - 23989881-23990483,23991475-23991489 28 5.9
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 84.6 bits (200), Expect = 5e-17
Identities = 40/77 (51%), Positives = 52/77 (67%)
Frame = +1
Query: 280 FTHLAWINTPRKQGGLGPMNIPLISDKXHRIXRDYGVLDEETGIPFRGLFIIDDKQNLXL 459
F+HLAW+ T RK GGLG + PLISD I + +GVL + GI RGLFIID + +
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQH 271
Query: 460 ITINDLPVXRSVEETLR 510
TIN+L + RSV+ET+R
Sbjct: 272 STINNLAIGRSVDETMR 288
Score = 81.4 bits (192), Expect = 4e-16
Identities = 38/61 (62%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Frame = +3
Query: 75 APQFKATXVVNGEFKDISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRXIGC 251
AP F A V + EF ++ LSDY GK YV+LFFYPLDFTFVCPTEI AFS++ DEF +
Sbjct: 74 APDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNT 133
Query: 252 E 254
E
Sbjct: 134 E 134
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = +1
Query: 385 GVLDEETGIPFRGLFIIDDKQNLXLITINDLPVXRSVEETLR 510
GV + GI RGLFIID + + TIN+L + RSV+ETLR
Sbjct: 73 GVSIDSVGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 114
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +3
Query: 123 ISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRXIGCE 254
+SLS +KG+ VV++FYP D T C + AF + ++F+ G E
Sbjct: 137 VSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 180
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 123 ISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEF 236
I + D+ G YV+LF +P DFT VC TE+ A + A EF
Sbjct: 57 IRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEF 95
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 36.3 bits (80), Expect = 0.017
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 123 ISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEF 236
I L D+ G YV++F +P DFT VC TE+ + A EF
Sbjct: 22 IRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEF 60
>02_05_1121 +
34262019-34262040,34262144-34262211,34262909-34263067,
34263146-34263313,34264125-34264278,34264845-34264924,
34265567-34265839,34265956-34266099,34266750-34266884,
34266994-34267092,34267530-34267586,34267673-34267877,
34268159-34268277,34268779-34268877,34268964-34269203
Length = 673
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 396 RGDGHSLPRTLHHRRQAEPXADHDQRPARX--EVGGGDPALVQAFQFT 533
RG S P L RQ E A+H++ +VG GDP+L +F+FT
Sbjct: 613 RGSFASEPEKLAEIRQIEQVAEHNRIALNIISQVGAGDPSLRVSFEFT 660
>06_03_1028 -
27004229-27004566,27005554-27005772,27006254-27006390,
27007172-27007509
Length = 343
Score = 31.1 bits (67), Expect = 0.63
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = -2
Query: 529 NWKACTSAGSPPPTSXRAGR*S*SAXGSACR 437
+W A SA PPP R GR S SA SA R
Sbjct: 17 DWDATASAEPPPPPGKRGGRDSSSASASAKR 47
>01_01_0288 - 2373764-2373923,2374016-2374398,2375426-2375710
Length = 275
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 310 RKQGGLGPMNIPLISDKXHRIXRDYGVLDEETGIPFRGLFIIDDKQNLXLITI 468
+K+ G G N+P D R +DY +DE+ +P F I D++ + ++ +
Sbjct: 65 KKKKGSGAGNLPGAIDAEIREAQDYLAIDEQEPVPENFPFEILDEEGMSVVIL 117
>01_03_0105 + 12604125-12604583
Length = 152
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 333 HEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPXADHDQRPA 479
H+H Q +P +LR GR DG H RRQ + +PA
Sbjct: 63 HQHKLFYSQPSPPRAKLRLVGRIDGRKEEAAHHSRRQPSLQKEAAAKPA 111
>07_03_1139 + 24254662-24255306
Length = 214
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Frame = +3
Query: 297 DQHAAQAGRTRPHEHSSDKRQVAPHLPRLR---------SAGRGDGHSLPRTLHHRRQAE 449
D A +T P H D PHLP L +AG P HHR ++
Sbjct: 140 DSSALCCPKTPPPAHRPDPATAVPHLPPLGRDPSPSPLPTAGENSTSPTPEREHHRGESP 199
Query: 450 PXADHDQRPA 479
A +RPA
Sbjct: 200 ADAFLARRPA 209
>07_01_0478 - 3605306-3605614,3605766-3605906
Length = 149
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 393 GRGDGHSLPRTLHHR 437
G DGH LPRTL HR
Sbjct: 4 GGDDGHGLPRTLSHR 18
>06_03_0736 - 23989881-23990483,23991475-23991489
Length = 205
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 393 GRGDGHSLPRTLHHRRQAE-PXADHDQRPARXEV-GGGDPALVQAFQFTXQATARCA 557
G G GH + + + E P A D + A E GGG VQA + T +A ++ A
Sbjct: 88 GDGGGHDIAHEVEAKLAVETPPAAADAKEAEPEEEGGGGRRRVQAKKTTEKAASKAA 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,124,694
Number of Sequences: 37544
Number of extensions: 231881
Number of successful extensions: 758
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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