Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0978.Seq
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)                   111   3e-25
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   1e-22
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)              96   2e-20
SB_49729| Best HMM Match : Vps54 (HMM E-Value=3.7)                     31   0.64 
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.0  
SB_37636| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
          Length = 265

 Score =  111 bits (268), Expect = 3e-25
 Identities = 51/80 (63%), Positives = 63/80 (78%)
 Frame = +1

Query: 271 DSHFTHLAWINTPRKQGGLGPMNIPLISDKXHRIXRDYGVLDEETGIPFRGLFIIDDKQN 450
           DS ++HLAW N PRK+GG+G +NIP++SD   +I +DYGVL E+ G+  RGLFIIDDK  
Sbjct: 124 DSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGI 183

Query: 451 LXLITINDLPVXRSVEETLR 510
           L  ITINDLPV RSV+ETLR
Sbjct: 184 LRQITINDLPVGRSVDETLR 203



 Score =  105 bits (252), Expect = 2e-23
 Identities = 50/79 (63%), Positives = 60/79 (75%), Gaps = 4/79 (5%)
 Frame = +3

Query: 30  KVFSFNKMPLQMT---KPAPQFKATXV-VNGEFKDISLSDYKGKYVVLFFYPLDFTFVCP 197
           ++ SF++  +  T   KPAP F  T V  +GEF D+ LSDYKGKYVVLFFYPLDFTFVCP
Sbjct: 39  RMMSFSRADMSKTAIQKPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCP 98

Query: 198 TEIIAFSEKADEFRXIGCE 254
           TEIIAFS++ DEF+ I CE
Sbjct: 99  TEIIAFSDRVDEFKAINCE 117


>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score =  103 bits (247), Expect = 1e-22
 Identities = 44/65 (67%), Positives = 56/65 (86%)
 Frame = +3

Query: 60  QMTKPAPQFKATXVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFR 239
           Q++KPAP ++ T VVNGEFK++ LSD++GKY+V FFYPLDFTFVCPTEIIAFS++ +EFR
Sbjct: 55  QISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFR 114

Query: 240 XIGCE 254
            I  E
Sbjct: 115 AINTE 119



 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 23/30 (76%), Positives = 25/30 (83%)
 Frame = +1

Query: 421 GLFIIDDKQNLXLITINDLPVXRSVEETLR 510
           GLFIIDDK  L  IT+NDLPV RSV+ETLR
Sbjct: 135 GLFIIDDKGVLRQITMNDLPVGRSVDETLR 164


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 45/70 (64%), Positives = 55/70 (78%)
 Frame = +1

Query: 301 NTPRKQGGLGPMNIPLISDKXHRIXRDYGVLDEETGIPFRGLFIIDDKQNLXLITINDLP 480
           N PRK+GG+G +NIP++SD   +I +DYGVL E+ G+  RGLFIIDDK  L  ITINDLP
Sbjct: 3   NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62

Query: 481 VXRSVEETLR 510
           V RSV+ETLR
Sbjct: 63  VGRSVDETLR 72


>SB_49729| Best HMM Match : Vps54 (HMM E-Value=3.7)
          Length = 353

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 333 HEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPXADHDQRPARXEVG 494
           H+  + K  + P LP  ++  R   + L   LH     EP A   + P R E G
Sbjct: 151 HKWRNLKEVLVPSLPERQTGQRNRTNKLLMNLHRVTSPEPPATRPKHPGRVEAG 204


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +3

Query: 309 AQAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPXADHDQRPAR 482
           + AG     +    +R+ A H PR+   G G+ HS+P  +      +P     + P +
Sbjct: 18  SSAGEESLADSGEGRRENARHKPRVMIGGEGEKHSVPAVITIPSVTDPGVAEGRPPRK 75


>SB_37636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/57 (29%), Positives = 21/57 (36%)
 Frame = +3

Query: 312 QAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPXADHDQRPAR 482
           Q GR RP++H      V  H PR R   R    S P +   R        H  +  R
Sbjct: 147 QTGRMRPYDHQRRGCIVRNHRPRDRQQSRRTARSPPHSTTDREDGTLAERHAPQAPR 203


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 315 AGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPR 422
           +G+  P   SSD R     L  LRS   G  +SLPR
Sbjct: 399 SGKEGPMSDSSDLRAALKELAYLRSIQTGGEYSLPR 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,457,324
Number of Sequences: 59808
Number of extensions: 249618
Number of successful extensions: 3987
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3987
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)