BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0978.Seq (560 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0) 111 3e-25 SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 1e-22 SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012) 96 2e-20 SB_49729| Best HMM Match : Vps54 (HMM E-Value=3.7) 31 0.64 SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0 SB_37636| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5 SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0 >SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0) Length = 265 Score = 111 bits (268), Expect = 3e-25 Identities = 51/80 (63%), Positives = 63/80 (78%) Frame = +1 Query: 271 DSHFTHLAWINTPRKQGGLGPMNIPLISDKXHRIXRDYGVLDEETGIPFRGLFIIDDKQN 450 DS ++HLAW N PRK+GG+G +NIP++SD +I +DYGVL E+ G+ RGLFIIDDK Sbjct: 124 DSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGI 183 Query: 451 LXLITINDLPVXRSVEETLR 510 L ITINDLPV RSV+ETLR Sbjct: 184 LRQITINDLPVGRSVDETLR 203 Score = 105 bits (252), Expect = 2e-23 Identities = 50/79 (63%), Positives = 60/79 (75%), Gaps = 4/79 (5%) Frame = +3 Query: 30 KVFSFNKMPLQMT---KPAPQFKATXV-VNGEFKDISLSDYKGKYVVLFFYPLDFTFVCP 197 ++ SF++ + T KPAP F T V +GEF D+ LSDYKGKYVVLFFYPLDFTFVCP Sbjct: 39 RMMSFSRADMSKTAIQKPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCP 98 Query: 198 TEIIAFSEKADEFRXIGCE 254 TEIIAFS++ DEF+ I CE Sbjct: 99 TEIIAFSDRVDEFKAINCE 117 >SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 237 Score = 103 bits (247), Expect = 1e-22 Identities = 44/65 (67%), Positives = 56/65 (86%) Frame = +3 Query: 60 QMTKPAPQFKATXVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFR 239 Q++KPAP ++ T VVNGEFK++ LSD++GKY+V FFYPLDFTFVCPTEIIAFS++ +EFR Sbjct: 55 QISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFR 114 Query: 240 XIGCE 254 I E Sbjct: 115 AINTE 119 Score = 47.2 bits (107), Expect = 9e-06 Identities = 23/30 (76%), Positives = 25/30 (83%) Frame = +1 Query: 421 GLFIIDDKQNLXLITINDLPVXRSVEETLR 510 GLFIIDDK L IT+NDLPV RSV+ETLR Sbjct: 135 GLFIIDDKGVLRQITMNDLPVGRSVDETLR 164 >SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012) Length = 704 Score = 95.9 bits (228), Expect = 2e-20 Identities = 45/70 (64%), Positives = 55/70 (78%) Frame = +1 Query: 301 NTPRKQGGLGPMNIPLISDKXHRIXRDYGVLDEETGIPFRGLFIIDDKQNLXLITINDLP 480 N PRK+GG+G +NIP++SD +I +DYGVL E+ G+ RGLFIIDDK L ITINDLP Sbjct: 3 NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62 Query: 481 VXRSVEETLR 510 V RSV+ETLR Sbjct: 63 VGRSVDETLR 72 >SB_49729| Best HMM Match : Vps54 (HMM E-Value=3.7) Length = 353 Score = 31.1 bits (67), Expect = 0.64 Identities = 16/54 (29%), Positives = 23/54 (42%) Frame = +3 Query: 333 HEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPXADHDQRPARXEVG 494 H+ + K + P LP ++ R + L LH EP A + P R E G Sbjct: 151 HKWRNLKEVLVPSLPERQTGQRNRTNKLLMNLHRVTSPEPPATRPKHPGRVEAG 204 >SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1755 Score = 29.5 bits (63), Expect = 2.0 Identities = 14/58 (24%), Positives = 25/58 (43%) Frame = +3 Query: 309 AQAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPXADHDQRPAR 482 + AG + +R+ A H PR+ G G+ HS+P + +P + P + Sbjct: 18 SSAGEESLADSGEGRRENARHKPRVMIGGEGEKHSVPAVITIPSVTDPGVAEGRPPRK 75 >SB_37636| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 205 Score = 28.3 bits (60), Expect = 4.5 Identities = 17/57 (29%), Positives = 21/57 (36%) Frame = +3 Query: 312 QAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPXADHDQRPAR 482 Q GR RP++H V H PR R R S P + R H + R Sbjct: 147 QTGRMRPYDHQRRGCIVRNHRPRDRQQSRRTARSPPHSTTDREDGTLAERHAPQAPR 203 >SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1926 Score = 27.9 bits (59), Expect = 6.0 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +3 Query: 315 AGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPR 422 +G+ P SSD R L LRS G +SLPR Sbjct: 399 SGKEGPMSDSSDLRAALKELAYLRSIQTGGEYSLPR 434 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,457,324 Number of Sequences: 59808 Number of extensions: 249618 Number of successful extensions: 3987 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 3953 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3987 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1312894764 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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