Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0978.Seq
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...   125   3e-29
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...   109   1e-24
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    36   0.020
Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical p...    28   5.3  

>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
           protein 2 protein.
          Length = 195

 Score =  125 bits (301), Expect = 3e-29
 Identities = 58/80 (72%), Positives = 65/80 (81%)
 Frame = +1

Query: 271 DSHFTHLAWINTPRKQGGLGPMNIPLISDKXHRIXRDYGVLDEETGIPFRGLFIIDDKQN 450
           DS F+HLAWIN PRK GGLG MNIP+++D  H+I RDYGVL E+ GI FRGLFIID  QN
Sbjct: 76  DSVFSHLAWINQPRKHGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFRGLFIIDPSQN 135

Query: 451 LXLITINDLPVXRSVEETLR 510
           L  ITINDLPV RSV+ETLR
Sbjct: 136 LRQITINDLPVGRSVDETLR 155



 Score =  109 bits (261), Expect = 2e-24
 Identities = 48/59 (81%), Positives = 54/59 (91%)
 Frame = +3

Query: 69  KPAPQFKATXVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRXI 245
           KPAPQFK   VV+GEF D+SLSDYKGKYVVLFFYPLDFTFVCPTEIIAFS++A+EF+ I
Sbjct: 8   KPAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKAI 66


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score =  109 bits (263), Expect = 1e-24
 Identities = 49/83 (59%), Positives = 63/83 (75%)
 Frame = +1

Query: 271 DSHFTHLAWINTPRKQGGLGPMNIPLISDKXHRIXRDYGVLDEETGIPFRGLFIIDDKQN 450
           DSHF+HLAW+NTPRK GGLG M+IPL++D   +I   +GVLD+E+G+ +RGLF+ID    
Sbjct: 105 DSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLDKESGLSYRGLFLIDPSGT 164

Query: 451 LXLITINDLPVXRSVEETLRWCK 519
           +   T NDLPV RSV+ETLR  K
Sbjct: 165 VRHTTCNDLPVGRSVDETLRVLK 187



 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 42/67 (62%), Positives = 52/67 (77%)
 Frame = +3

Query: 54  PLQMTKPAPQFKATXVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADE 233
           PL      P FK T VV+G+FK IS  DYKGK++V+FFYPLDFTFVCPTEIIA+ ++A+E
Sbjct: 32  PLGPKNTVPAFKGTAVVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEIIAYGDRANE 91

Query: 234 FRXIGCE 254
           FR +G E
Sbjct: 92  FRSLGAE 98


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +3

Query: 117 KDISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFR 239
           K+ +L +Y G+ +++LF +P DFT VC TE+    + A EFR
Sbjct: 18  KNQTLHNYIGEQWLMLFSHPADFTPVCTTELAELVKLAPEFR 59


>Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical
           protein B0285.1 protein.
          Length = 730

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 333 HEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEP 452
           HE  S K++ +  L R      G GHS+  T H R   +P
Sbjct: 625 HEMWSKKQKKSARLGRQAEGSSGSGHSIRATSHPRAPTQP 664


>Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical
           protein F26E4.12 protein.
          Length = 163

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 99  VVNGEFKDISLSDYKGKYVVL 161
           V N    D+SLSDYKGK +++
Sbjct: 9   VKNANGDDVSLSDYKGKVLII 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,371,093
Number of Sequences: 27780
Number of extensions: 175410
Number of successful extensions: 490
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)