Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0978.Seq
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.8  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 406 PSPRPALRSRGRCGATCRLSEECSW 332
           P P P+   RGRC +  ++S    W
Sbjct: 45  PKPIPSYACRGRCSSYLQVSGSKIW 69


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
 Frame = +3

Query: 357  QVAPHLPRLRSAGRGD--GHSLPRTLHHRRQAEPXADHDQRPARXEVGGGDPALVQAFQF 530
            Q  PH     S   G   GH    + H R  ++     + R +R    GG       F  
Sbjct: 1746 QTFPHPGNGHSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRYSRVPSQGGGSGTHNVFSP 1805

Query: 531  TXQATARCAP 560
                 A CAP
Sbjct: 1806 EYDDPANCAP 1815


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 93   TXVVNGEFKDISLSDY 140
            T +++  FKD+ LSD+
Sbjct: 1401 TPIMDAHFKDVKLSDF 1416


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 526 WKACTSAGSPP 494
           W  CT+ GSPP
Sbjct: 49  WLDCTATGSPP 59


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 526 WKACTSAGSPP 494
           W  CT+ GSPP
Sbjct: 49  WLDCTATGSPP 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,150
Number of Sequences: 438
Number of extensions: 1988
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)