BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0978.Seq (560 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alph... 24 1.2 AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 2.8 AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 23 2.8 AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 2.8 AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 2.8 >AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alpha protein precursor protein. Length = 153 Score = 23.8 bits (49), Expect = 1.2 Identities = 9/25 (36%), Positives = 13/25 (52%) Frame = -2 Query: 406 PSPRPALRSRGRCGATCRLSEECSW 332 P P P+ RGRC + ++S W Sbjct: 45 PKPIPSYACRGRCSSYLQVSGSKIW 69 >AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. Length = 1946 Score = 22.6 bits (46), Expect = 2.8 Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 2/70 (2%) Frame = +3 Query: 357 QVAPHLPRLRSAGRGD--GHSLPRTLHHRRQAEPXADHDQRPARXEVGGGDPALVQAFQF 530 Q PH S G GH + H R ++ + R +R GG F Sbjct: 1746 QTFPHPGNGHSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRYSRVPSQGGGSGTHNVFSP 1805 Query: 531 TXQATARCAP 560 A CAP Sbjct: 1806 EYDDPANCAP 1815 >AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor protein. Length = 1770 Score = 22.6 bits (46), Expect = 2.8 Identities = 7/16 (43%), Positives = 12/16 (75%) Frame = +3 Query: 93 TXVVNGEFKDISLSDY 140 T +++ FKD+ LSD+ Sbjct: 1401 TPIMDAHFKDVKLSDF 1416 >AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule AbsCAM-Ig7B protein. Length = 1923 Score = 22.6 bits (46), Expect = 2.8 Identities = 7/11 (63%), Positives = 8/11 (72%) Frame = -2 Query: 526 WKACTSAGSPP 494 W CT+ GSPP Sbjct: 49 WLDCTATGSPP 59 >AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member AbsCAM-Ig7A protein. Length = 1919 Score = 22.6 bits (46), Expect = 2.8 Identities = 7/11 (63%), Positives = 8/11 (72%) Frame = -2 Query: 526 WKACTSAGSPP 494 W CT+ GSPP Sbjct: 49 WLDCTATGSPP 59 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 124,150 Number of Sequences: 438 Number of extensions: 1988 Number of successful extensions: 5 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5 length of database: 146,343 effective HSP length: 54 effective length of database: 122,691 effective search space used: 16195212 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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