Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0978.Seq
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)...    90   1e-18
At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putat...    89   2e-18
At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to pe...    46   1e-05
At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putati...    34   0.075
At3g06050.1 68416.m00692 alkyl hydroperoxide reductase/thiol spe...    32   0.30 
At3g62170.1 68416.m06985 pectinesterase family protein contains ...    29   2.1  
At5g61850.1 68418.m07760 floral meristem identity control protei...    28   4.9  
At1g80910.1 68414.m09493 expressed protein                             28   4.9  
At4g28395.1 68417.m04064 lipid transfer protein, putative identi...    27   6.5  
At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1) domain...    27   8.6  

>At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)
           identical to SP|Q96291 2-cys peroxiredoxin BAS1,
           chloroplast precursor {Arabidopsis thaliana}; contains
           Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
           reductase and thiol-specific antioxidant) family
          Length = 266

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 43/80 (53%), Positives = 55/80 (68%)
 Frame = +1

Query: 271 DSHFTHLAWINTPRKQGGLGPMNIPLISDKXHRIXRDYGVLDEETGIPFRGLFIIDDKQN 450
           DS F+HLAW+ T RK GGLG +N PLISD    I + +GVL  + GI  RGLFIID +  
Sbjct: 146 DSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQGIALRGLFIIDKEGV 205

Query: 451 LXLITINDLPVXRSVEETLR 510
           +   TIN+L + RSV+ET+R
Sbjct: 206 IQHSTINNLGIGRSVDETMR 225



 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 40/69 (57%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
 Frame = +3

Query: 51  MPLQMTKPAPQFKATXVVNGEFKDISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKA 227
           +PL   K AP F+A  V + EF  + LSDY GK YV+LFFYPLDFTFVCPTEI AFS++ 
Sbjct: 72  LPLVGNK-APDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRH 130

Query: 228 DEFRXIGCE 254
            EF  +  E
Sbjct: 131 SEFEKLNTE 139


>At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putative
           very strong similarity to SP|Q96291 2-cys peroxiredoxin
           BAS1, chloroplast precursor {Arabidopsis thaliana};
           contains Pfam profile: PF00578 AhpC/TSA (alkyl
           hydroperoxide reductase and thiol-specific antioxidant)
           family
          Length = 273

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 42/80 (52%), Positives = 55/80 (68%)
 Frame = +1

Query: 271 DSHFTHLAWINTPRKQGGLGPMNIPLISDKXHRIXRDYGVLDEETGIPFRGLFIIDDKQN 450
           DS F+HLAW+ T RK GGLG +N PL+SD    I + +GVL  + GI  RGLFIID +  
Sbjct: 153 DSVFSHLAWVQTDRKSGGLGDLNYPLVSDITKSISKSFGVLIPDQGIALRGLFIIDKEGV 212

Query: 451 LXLITINDLPVXRSVEETLR 510
           +   TIN+L + RSV+ET+R
Sbjct: 213 IQHSTINNLGIGRSVDETMR 232



 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 39/69 (56%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
 Frame = +3

Query: 51  MPLQMTKPAPQFKATXVVNGEFKDISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKA 227
           +PL   K AP F+A  V + EF  + LS+Y GK YV+LFFYPLDFTFVCPTEI AFS++ 
Sbjct: 79  LPLVGNK-APDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRY 137

Query: 228 DEFRXIGCE 254
           +EF  +  E
Sbjct: 138 EEFEKLNTE 146


>At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to
           peroxiredoxin Q [Sedum lineare] GI:6899842; contains
           Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
           reductase and thiol-specific antioxidant) family
          Length = 216

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 21/46 (45%), Positives = 28/46 (60%)
 Frame = +3

Query: 117 KDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRXIGCE 254
           K +SL  YKGK VVL+FYP D T  C  +  AF +  ++F+  G E
Sbjct: 86  KPVSLKKYKGKPVVLYFYPADETPGCTKQACAFRDSYEKFKKAGAE 131



 Score = 35.1 bits (77), Expect = 0.032
 Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +1

Query: 346 LISDKXHRIXRDYGVLDEETG-IPFRGLFIIDDKQNLXLITINDLPVXRSVEETLRWCK 519
           L+SD+ +++ +D+GV  +  G +P R  +++D    + LI  N     + ++ETL++ K
Sbjct: 156 LLSDEGNKVRKDWGVPGDLFGALPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKFLK 214


>At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putative
           identical to peroxiredoxin (Rehydrin homolog)
           [Arabidopsis thaliana] SWISS-PROT:O04005; contains Pfam
           profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase
           and thiol-specific antioxidant) family
          Length = 216

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 129 LSDY-KGKYVVLFFYPLDFTFVCPTEIIAFSEKADEF 236
           L DY    + VLF +P DFT VC TE+ A ++ A EF
Sbjct: 24  LHDYFANSWTVLFSHPGDFTPVCTTELGAMAKYAHEF 60



 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/76 (23%), Positives = 30/76 (39%)
 Frame = +1

Query: 283 THLAWINTPRKQGGLGPMNIPLISDKXHRIXRDYGVLDEETGIPFRGLFIIDDKQNLXLI 462
           +H  WI           +N P+I+D    I     ++D     P R L I+     + L 
Sbjct: 77  SHKDWIKDIEAFNHGSKVNYPIIADPNKEIIPQLNMIDPIENGPSRALHIVGPDSKIKLS 136

Query: 463 TINDLPVXRSVEETLR 510
            +      R+++E LR
Sbjct: 137 FLYPSTTGRNMDEVLR 152


>At3g06050.1 68416.m00692 alkyl hydroperoxide reductase/thiol
           specific antioxidant (AhpC/TSA)/mal allergen family
           protein identical to SP|Q9M7T0 Putative peroxiredoxin,
           mitochondrial precursor {Arabidopsis thaliana}; similar
           to thioredoxin peroxidase [Capsicum annuum] GI:18654477;
           contains Pfam profile: PF00578 AhpC/TSA (alkyl
           hydroperoxide reductase and thiol-specific antioxidant)
           family
          Length = 201

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +3

Query: 102 VNGEFKDISLSD-YKGKYVVLFFYPLDFTFVCPTE-IIAFSEKADEFRXIGCE 254
           V+ +F    LSD +KGK VV+F  P  +T VC  + + ++    D+F+  G +
Sbjct: 58  VSSKFSTTPLSDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGID 110


>At3g62170.1 68416.m06985 pectinesterase family protein contains
           Pfam profiles: PF01095 pectinesterase, PF04043 plant
           invertase/pectin methylesterase inhibitor  ;similar to
           pollen-specific pectin esterase GI:1620652 from
           [Brassica rapa subsp. pekinensis]
          Length = 588

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 155 NIFPLVVRQRNVLELSVDDXRGLELGSGFGHLQRHLVETKD 33
           +IF  VV     + + VDD + + +G+G G   R L+E  D
Sbjct: 192 DIFHSVVTAMAQMGVKVDDMKNITMGAGAGGAARRLLEDND 232


>At5g61850.1 68418.m07760 floral meristem identity control protein
           LEAFY (LFY) identical to PIR|B38104 LFY floral meristem
           identity control protein, splice form 2 - Arabidopsis
           thaliana; contains Pfam profile PF01698: Floricaula /
           Leafy protein
          Length = 420

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/65 (27%), Positives = 23/65 (35%)
 Frame = +3

Query: 306 AAQAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPXADHDQRPARX 485
           A +A R R  E   ++     HL    +   G  H+L          EP    DQ  A  
Sbjct: 110 AVRAERRRLQEEEEEESSRRRHLLLSAAGDSGTHHALDALSQEGLSEEPVQQQDQTDAAG 169

Query: 486 EVGGG 500
             GGG
Sbjct: 170 NNGGG 174


>At1g80910.1 68414.m09493 expressed protein
          Length = 497

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 120 DISLSDYKGKYV--VLFFYPLDFTFVCPTEIIAFSE 221
           D+    ++G+ +  +LFFYP D TF     +I  SE
Sbjct: 19  DLRRGQHEGQELDKILFFYPPDLTFSTQLSVIGLSE 54


>At4g28395.1 68417.m04064 lipid transfer protein, putative identical
           to anther-specific gene ATA7 [gi:2746339]; contains Pfam
           protease inhibitor/seed storage/LTP family domain
          Length = 180

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 371 MRCXLSLIRGMFMGPSPPCLRGVLIQARCVKCES 270
           M C +  + G+F  PSP C RGV      VK  S
Sbjct: 77  MPC-MGFVEGIFQQPSPDCCRGVTHLNNVVKFTS 109


>At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein  Pfam profile PF00564: PB1
           domain
          Length = 720

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +3

Query: 303 HAAQAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLP 419
           H  QAG  +P    S  + + P       +  G GH LP
Sbjct: 389 HGVQAGYRKPPTPRSQPQNLPPQQAHQLKSNSGGGHELP 427


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,918,946
Number of Sequences: 28952
Number of extensions: 166177
Number of successful extensions: 478
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)