Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0977.Seq
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    27   2.5  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    26   4.4  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    25   5.9  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   7.7  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    25   7.7  

>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 271 DLLPSLVPPPRQFVMSSHQPT 333
           D +P LVPPP  FV    +PT
Sbjct: 24  DSVPGLVPPPSNFVPVYPEPT 44


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 20/71 (28%), Positives = 36/71 (50%)
 Frame = +2

Query: 341 EGNIPTDAKPTSLNSP*SCGAQNFPSKASIQQIPTIVENYLLILQTSMHVNFNIKIIT*Y 520
           EG +P  +    +N+P +   +N PS+++    P +++  LLI  T ++V  N+  I  Y
Sbjct: 39  EGALPPYSDHALVNNPPNTHRENNPSRSTDNSSPFLIK--LLISFTPIYV-LNVLAIC-Y 94

Query: 521 VFYYYELLKGY 553
           + Y     K Y
Sbjct: 95  LTYKDAFFKDY 105


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 229 SGGNFQRFHKILFYDL--LPSLVPPPRQFVMSSHQPTTPRRQH 351
           +GG+ Q+F + +   L  LP+  PPP Q  +S       R  H
Sbjct: 57  AGGDGQKFERSVTSRLVRLPAQDPPPEQVTLSPESAKLLRNAH 99


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 396  QLHGEFNEVGLASVGMLPSWCGGLMAAH 313
            +L+ +  E  L   G LPSWC  L +A+
Sbjct: 1198 KLNRQLEEQQLVVHGCLPSWCISLTSAY 1225


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 341 EGNIPTDAKPTSLNSP*SCGAQNFPSKASIQQIPTIVENYLLILQTSM 484
           EG +  DAK +  N+P S      PSK S+++  +  ++ L +L T +
Sbjct: 513 EGRLEIDAKSSKTNTPPSPLLVGTPSKESLKEASS--DDELPVLATKL 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,925
Number of Sequences: 5004
Number of extensions: 50393
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)