Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0977.Seq
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0415 + 3191392-3191952                                           36   0.017
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047...    28   6.0  
02_04_0534 + 23725051-23726253                                         27   7.9  

>03_01_0415 + 3191392-3191952
          Length = 186

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +1

Query: 226 FSGGNFQRFHKILFYDLLPSLVPPPRQFVMSSHQPTTPRRQHPHG 360
           F+  N + FH  +   +LPS  PPP +   SS +P TP+ Q  HG
Sbjct: 36  FNAVNCRAFHSSVSIGILPSPPPPPAR-TYSSPEPKTPKSQPHHG 79


>08_02_1508 +
           27602104-27602265,27602398-27602449,27603357-27604757,
           27604833-27606140,27606594-27607435
          Length = 1254

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +3

Query: 255 QNTFLRSTTIFGTTP---APICDEQPSAHHTTKATSPRMPSR 371
           ++ F  +T    +TP   AP   +QPS+   T +T+P++P R
Sbjct: 298 ESNFFTTTEKTPSTPRSRAPTTQKQPSSTFFTPSTTPKIPQR 339


>02_04_0534 + 23725051-23726253
          Length = 400

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 277 LPSLVPPPRQFVMSSHQPTTPRRQHPHG 360
           LP L PPP   +  +  P +PR  H +G
Sbjct: 57  LPPLAPPPAAPLAPAPPPDSPRTPHTYG 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,473,522
Number of Sequences: 37544
Number of extensions: 311556
Number of successful extensions: 898
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)