Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0977.Seq
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    32   0.38 
SB_33669| Best HMM Match : EMP70 (HMM E-Value=3.9e-11)                 31   0.50 
SB_57306| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +3

Query: 246 AFPQNTFLRSTTIFGTTPAPICDEQPSAHHTTKATSP 356
           AF Q+  +    IF   PA I DE P  HH     SP
Sbjct: 869 AFHQDDIIAPPPIFADFPAAIVDESPDGHHDIIPPSP 905


>SB_33669| Best HMM Match : EMP70 (HMM E-Value=3.9e-11)
          Length = 809

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 273 STTIFGTTPAPICDEQPSAHHTTKATSPRMPSRPH 377
           S T F T PAP+    PS +  T A +P  P  PH
Sbjct: 337 SVTPFAT-PAPVATTTPSTNAATAAANPPSPRNPH 370


>SB_57306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 50  HN-NNIYTLYTRKYYNNHRLTRTTSKYSAN 136
           HN +++ T   RKYY +  LTRT  KY+ +
Sbjct: 44  HNTSSLLTRTLRKYYTSSLLTRTLRKYNTS 73


>SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1172

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 393 LHGEFNEVGLASVGMLPSWCGGLMAAHHKLARGWYQRW 280
           LH  +   GLA V  +P  C G  A HH   R +   W
Sbjct: 830 LHPRWAPCGLAKVLSVPHCCWGSCALHHLGQRLYQYEW 867


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,706,687
Number of Sequences: 59808
Number of extensions: 347965
Number of successful extensions: 906
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)