Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0977.Seq
         (568 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    28   0.24 
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    24   4.0  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   5.3  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         23   6.9  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         23   6.9  
AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    23   6.9  
Z22930-5|CAA80517.1|  275|Anopheles gambiae trypsin protein.           23   9.2  
AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    23   9.2  
AY193729-1|AAO62002.1|  499|Anopheles gambiae cytochrome P450 CY...    23   9.2  
AJ302657-1|CAC35522.1|  115|Anopheles gambiae gSG6 protein protein.    23   9.2  

>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 27.9 bits (59), Expect = 0.24
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 273 STTIFGTTPAPICDEQPSAHHTTKATSPRMP 365
           S ++ G     +CDE PS H+T K    R+P
Sbjct: 186 SPSLVGDNNWRVCDETPSDHNTIKFVVGRVP 216


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 50  HNNNIYTLYTRKYYNNHRLTRTTSK 124
           HN+N    Y   YY N R  RT +K
Sbjct: 71  HNDNATAEYLSCYYQNVRGLRTKTK 95


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 320 AISPPHHEGNIPTDAKPTSLNSP 388
           AISP + EG++PT   P +  +P
Sbjct: 802 AISPLYCEGSVPTLQSPKNAVAP 824


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 261 TFLRSTTIFGTTPAPICDEQPSAHHTTKATSPRMPSRPH*THHEVVVPKTFLRRRQ 428
           T   + T+   +P P C    S   T+ A++   P+R       VVVP + L  +Q
Sbjct: 26  TSTTTVTMATASPVPACTTTTSTTSTSGASAASSPTR---DEMSVVVPISPLHIKQ 78


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 261 TFLRSTTIFGTTPAPICDEQPSAHHTTKATSPRMPSRPH*THHEVVVPKTFLRRRQ 428
           T   + T+   +P P C    S   T+ A++   P+R       VVVP + L  +Q
Sbjct: 26  TSTTTVTMATASPVPACTTTTSTTSTSGASAASSPTR---DEMSVVVPISPLHIKQ 78


>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 304 QFVMSSHQPTTPRRQHPHGCQ 366
           Q+  S HQP    R   HG Q
Sbjct: 213 QYQQSVHQPQQSSRDQQHGAQ 233


>Z22930-5|CAA80517.1|  275|Anopheles gambiae trypsin protein.
          Length = 275

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 373 GRLGIRGDVAFVVWWADGCSSQIGAGVVPKMVVDRKKV 260
           G L + G +  VV W  GC+     GV  ++ V R  V
Sbjct: 232 GPLVVDGKLVGVVSWGFGCAMPGYPGVYARVAVVRNWV 269


>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/38 (21%), Positives = 19/38 (50%)
 Frame = +2

Query: 422 ASIQQIPTIVENYLLILQTSMHVNFNIKIIT*YVFYYY 535
           A+  ++P   +N +    T+        ++T +++YYY
Sbjct: 544 AAFMKMPQFFQNVIFYFGTASFAIPCFVVLTFFIYYYY 581


>AY193729-1|AAO62002.1|  499|Anopheles gambiae cytochrome P450
           CYPm3r9 protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 280 PSLVPPPRQFVMSSHQPTTPRRQHPH 357
           P + P P QF      P    ++HP+
Sbjct: 407 PEVFPNPEQFDPERFSPEQEAKRHPY 432


>AJ302657-1|CAC35522.1|  115|Anopheles gambiae gSG6 protein protein.
          Length = 115

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 286 KMVVDRKKVFCGNAE 242
           K+ VDR KV+CG+ +
Sbjct: 30  KVWVDRDKVYCGHLD 44


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 583,148
Number of Sequences: 2352
Number of extensions: 12921
Number of successful extensions: 88
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 53404389
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)