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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0977.Seq
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038606-8|AAB92022.2|  313|Caenorhabditis elegans Serpentine re...    32   0.25 
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr...    28   5.4  
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra...    28   5.4  
AF040661-9|AAG24214.1|  345|Caenorhabditis elegans Hypothetical ...    27   7.1  
AF036690-1|AAB88323.1|  151|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U39646-8|AAA80372.2|  336|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF101312-2|AAC69222.2|  475|Caenorhabditis elegans Hypothetical ...    27   9.4  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      27   9.4  

>AF038606-8|AAB92022.2|  313|Caenorhabditis elegans Serpentine
           receptor, class z protein60 protein.
          Length = 313

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 134 NVVN*ITGVIKFIFETVRPFYCFLNLLHTTVFQEVIFSVSTKYFF 268
           N  N ITG+I  I+  + PFY ++N  +    Q V+    TK+FF
Sbjct: 19  NGSNLITGIIILIYFLLFPFYVYVNKANRKRDQAVLIYPFTKHFF 63


>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
            ZC101.2f protein.
          Length = 2389

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 294  TPAPICDEQPSAHHTTKATSPRMPSRPH*THHEVVVPKT 410
            T API     + H T  A  P++ +RP    H V+ P+T
Sbjct: 1577 TGAPIDSTPATVHVTNAAAPPQVEARP--PQHPVITPQT 1613


>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 294  TPAPICDEQPSAHHTTKATSPRMPSRPH*THHEVVVPKT 410
            T API     + H T  A  P++ +RP    H V+ P+T
Sbjct: 1670 TGAPIDSTPATVHVTNAAAPPQVEARP--PQHPVITPQT 1706


>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
            ZC101.2a protein.
          Length = 2482

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 294  TPAPICDEQPSAHHTTKATSPRMPSRPH*THHEVVVPKT 410
            T API     + H T  A  P++ +RP    H V+ P+T
Sbjct: 1670 TGAPIDSTPATVHVTNAAAPPQVEARP--PQHPVITPQT 1706


>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
            ZC101.2f protein.
          Length = 2389

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 294  TPAPICDEQPSAHHTTKATSPRMPSRPH*THHEVVVPKT 410
            T API     + H T  A  P++ +RP    H V+ P+T
Sbjct: 1577 TGAPIDSTPATVHVTNAAAPPQVEARP--PQHPVITPQT 1613


>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 294  TPAPICDEQPSAHHTTKATSPRMPSRPH*THHEVVVPKT 410
            T API     + H T  A  P++ +RP    H V+ P+T
Sbjct: 1670 TGAPIDSTPATVHVTNAAAPPQVEARP--PQHPVITPQT 1706


>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
            ZC101.2a protein.
          Length = 2482

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 294  TPAPICDEQPSAHHTTKATSPRMPSRPH*THHEVVVPKT 410
            T API     + H T  A  P++ +RP    H V+ P+T
Sbjct: 1670 TGAPIDSTPATVHVTNAAAPPQVEARP--PQHPVITPQT 1706


>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
            proteoglycan protein.
          Length = 2481

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 294  TPAPICDEQPSAHHTTKATSPRMPSRPH*THHEVVVPKT 410
            T API     + H T  A  P++ +RP    H V+ P+T
Sbjct: 1669 TGAPIDSTPATVHVTNAAAPPQVEARP--PQHPVITPQT 1705


>AF040661-9|AAG24214.1|  345|Caenorhabditis elegans Hypothetical
           protein W10G11.5 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +3

Query: 261 TFLRSTTIFGTTPAPICDEQPSAHHTTKATSPRMPSRPH*THHEVVVPKT 410
           T L STT    TP PI     +   TT  T+  +P+    TH    V  T
Sbjct: 76  TTLSSTTASTVTPTPILTTVTTTSTTTTVTTTPIPTTVTSTHIPTTVTTT 125


>AF036690-1|AAB88323.1|  151|Caenorhabditis elegans Hypothetical
           protein F09C11.1 protein.
          Length = 151

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 101 RLTRTTSKYSANVVN*ITGVIKFIFETVRPFYCFLNLLHT--TVFQEVIFSVSTKYFF 268
           R TR +S+ + N  N      +F  +T   F+CFLN++    T+     F  + KY+F
Sbjct: 66  RKTRLSSENTKNNEN--LEKKQFFLKTENQFFCFLNIVFKKFTICSVNNFQYNKKYYF 121


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
           protein C02F4.1 protein.
          Length = 1781

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 333 HTTKATSPRMPSRPH*THHEVVVPKTFLRRRQF 431
           H +   S     R H  HHE  +PKTF  R+ +
Sbjct: 283 HVSPIESSNATMRKH-GHHEATIPKTFYCRQSY 314


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
           protein C02F4.1 protein.
          Length = 1781

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 333 HTTKATSPRMPSRPH*THHEVVVPKTFLRRRQF 431
           H +   S     R H  HHE  +PKTF  R+ +
Sbjct: 283 HVSPIESSNATMRKH-GHHEATIPKTFYCRQSY 314


>U39646-8|AAA80372.2|  336|Caenorhabditis elegans Hypothetical
           protein F47B7.7 protein.
          Length = 336

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 294 TPAPICDEQPSAHHTTKATSPRMPSR 371
           +P+P  DE  +  H T+A SPR  SR
Sbjct: 200 SPSPTGDEPQAIPHRTQALSPRPASR 225


>AF101312-2|AAC69222.2|  475|Caenorhabditis elegans Hypothetical
           protein F56E10.3 protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 194 YCFLNLLHTTVFQEVIFSVSTKY 262
           +CFL++  + +FQE ++S +T Y
Sbjct: 169 FCFLSVYISRIFQENLYSTTTTY 191


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 333 HTTKATSPRMPSRPH*THHEVVVPKTFLRRRQF 431
           H +   S     R H  HHE  +PKTF  R+ +
Sbjct: 283 HVSPIESSNATMRKH-GHHEATIPKTFYCRQSY 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,917,017
Number of Sequences: 27780
Number of extensions: 282649
Number of successful extensions: 792
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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