Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0977.Seq
(568 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038606-8|AAB92022.2| 313|Caenorhabditis elegans Serpentine re... 32 0.25
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 5.4
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 28 5.4
AF040661-9|AAG24214.1| 345|Caenorhabditis elegans Hypothetical ... 27 7.1
AF036690-1|AAB88323.1| 151|Caenorhabditis elegans Hypothetical ... 27 7.1
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 27 9.4
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 27 9.4
U39646-8|AAA80372.2| 336|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF101312-2|AAC69222.2| 475|Caenorhabditis elegans Hypothetical ... 27 9.4
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 27 9.4
>AF038606-8|AAB92022.2| 313|Caenorhabditis elegans Serpentine
receptor, class z protein60 protein.
Length = 313
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 134 NVVN*ITGVIKFIFETVRPFYCFLNLLHTTVFQEVIFSVSTKYFF 268
N N ITG+I I+ + PFY ++N + Q V+ TK+FF
Sbjct: 19 NGSNLITGIIILIYFLLFPFYVYVNKANRKRDQAVLIYPFTKHFF 63
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 294 TPAPICDEQPSAHHTTKATSPRMPSRPH*THHEVVVPKT 410
T API + H T A P++ +RP H V+ P+T
Sbjct: 1577 TGAPIDSTPATVHVTNAAAPPQVEARP--PQHPVITPQT 1613
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 294 TPAPICDEQPSAHHTTKATSPRMPSRPH*THHEVVVPKT 410
T API + H T A P++ +RP H V+ P+T
Sbjct: 1670 TGAPIDSTPATVHVTNAAAPPQVEARP--PQHPVITPQT 1706
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 294 TPAPICDEQPSAHHTTKATSPRMPSRPH*THHEVVVPKT 410
T API + H T A P++ +RP H V+ P+T
Sbjct: 1670 TGAPIDSTPATVHVTNAAAPPQVEARP--PQHPVITPQT 1706
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 294 TPAPICDEQPSAHHTTKATSPRMPSRPH*THHEVVVPKT 410
T API + H T A P++ +RP H V+ P+T
Sbjct: 1577 TGAPIDSTPATVHVTNAAAPPQVEARP--PQHPVITPQT 1613
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 294 TPAPICDEQPSAHHTTKATSPRMPSRPH*THHEVVVPKT 410
T API + H T A P++ +RP H V+ P+T
Sbjct: 1670 TGAPIDSTPATVHVTNAAAPPQVEARP--PQHPVITPQT 1706
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 294 TPAPICDEQPSAHHTTKATSPRMPSRPH*THHEVVVPKT 410
T API + H T A P++ +RP H V+ P+T
Sbjct: 1670 TGAPIDSTPATVHVTNAAAPPQVEARP--PQHPVITPQT 1706
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 294 TPAPICDEQPSAHHTTKATSPRMPSRPH*THHEVVVPKT 410
T API + H T A P++ +RP H V+ P+T
Sbjct: 1669 TGAPIDSTPATVHVTNAAAPPQVEARP--PQHPVITPQT 1705
>AF040661-9|AAG24214.1| 345|Caenorhabditis elegans Hypothetical
protein W10G11.5 protein.
Length = 345
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +3
Query: 261 TFLRSTTIFGTTPAPICDEQPSAHHTTKATSPRMPSRPH*THHEVVVPKT 410
T L STT TP PI + TT T+ +P+ TH V T
Sbjct: 76 TTLSSTTASTVTPTPILTTVTTTSTTTTVTTTPIPTTVTSTHIPTTVTTT 125
>AF036690-1|AAB88323.1| 151|Caenorhabditis elegans Hypothetical
protein F09C11.1 protein.
Length = 151
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 101 RLTRTTSKYSANVVN*ITGVIKFIFETVRPFYCFLNLLHT--TVFQEVIFSVSTKYFF 268
R TR +S+ + N N +F +T F+CFLN++ T+ F + KY+F
Sbjct: 66 RKTRLSSENTKNNEN--LEKKQFFLKTENQFFCFLNIVFKKFTICSVNNFQYNKKYYF 121
>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 333 HTTKATSPRMPSRPH*THHEVVVPKTFLRRRQF 431
H + S R H HHE +PKTF R+ +
Sbjct: 283 HVSPIESSNATMRKH-GHHEATIPKTFYCRQSY 314
>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 333 HTTKATSPRMPSRPH*THHEVVVPKTFLRRRQF 431
H + S R H HHE +PKTF R+ +
Sbjct: 283 HVSPIESSNATMRKH-GHHEATIPKTFYCRQSY 314
>U39646-8|AAA80372.2| 336|Caenorhabditis elegans Hypothetical
protein F47B7.7 protein.
Length = 336
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 294 TPAPICDEQPSAHHTTKATSPRMPSR 371
+P+P DE + H T+A SPR SR
Sbjct: 200 SPSPTGDEPQAIPHRTQALSPRPASR 225
>AF101312-2|AAC69222.2| 475|Caenorhabditis elegans Hypothetical
protein F56E10.3 protein.
Length = 475
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 194 YCFLNLLHTTVFQEVIFSVSTKY 262
+CFL++ + +FQE ++S +T Y
Sbjct: 169 FCFLSVYISRIFQENLYSTTTTY 191
>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
Length = 1781
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 333 HTTKATSPRMPSRPH*THHEVVVPKTFLRRRQF 431
H + S R H HHE +PKTF R+ +
Sbjct: 283 HVSPIESSNATMRKH-GHHEATIPKTFYCRQSY 314
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,917,017
Number of Sequences: 27780
Number of extensions: 282649
Number of successful extensions: 792
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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