Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0977.Seq
         (568 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa...    32   0.31 
At3g16940.1 68416.m02165 calmodulin-binding protein similar to a...    29   2.2  
At5g28623.1 68418.m03496 hypothetical protein                          27   6.6  
At3g51330.1 68416.m05619 aspartyl protease family protein contai...    27   6.6  
At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger) fa...    27   8.7  

>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
           family protein similar to arabinogalactan protein
           [Daucus carota] GI:11322245; contains Pfam profile
           PF01190: Pollen proteins Ole e I family
          Length = 359

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +1

Query: 208 LTTYYCFSGGNFQRFHKILFYDLLPSLVPPPRQFVMSSHQPTTPRRQHPH 357
           L   +CF+   F    ++      PSL P P  +    H P  P   HPH
Sbjct: 12  LVALWCFTSSVFTE--EVNHKTQTPSLAPAPAPYHHGHHHPHPPHHHHPH 59


>At3g16940.1 68416.m02165 calmodulin-binding protein similar to
           anther ethylene-upregulated protein ER1 GI:11612392 from
           [Nicotiana tabacum]; contains Pfam profile: PF00612 IQ
           calmodulin-binding motif (3 copies)
          Length = 852

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 374 SLNSP*SCGAQNFPSKASIQQIPTIVENY 460
           S++SP S   Q FP++ + + I T+V N+
Sbjct: 155 SISSPISVSEQTFPNRVAAEDIDTVVRNH 183


>At5g28623.1 68418.m03496 hypothetical protein
          Length = 236

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 170 IFETVRPFYCFLNLLHTTVFQEVIFSVSTKYFFTIYYHLWYHPRANL 310
           + ET+  F+  + L   T      FS  T YFF+   + + +P+  L
Sbjct: 61  LLETIDEFFTKMGLGAFTSMDHATFSEPTNYFFSTMVYTFKNPKTPL 107


>At3g51330.1 68416.m05619 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 529

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 277 LPSLVPPPRQFVMSSHQPTTPRRQHPHGCQADLIELTMKL 396
           LPSL+PPP         P    R    G  A+L+ L  +L
Sbjct: 480 LPSLLPPPAAATPPQIDPRNSTRNSGTGTAANLVPLASQL 519


>At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 zinc finger
           protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 369

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 95  NHRLTRTTSKYSANVVN*ITGVIKFIFETVRPFYCFLNLLHTTV 226
           NH+LT ++S  S+   N I+ +I FI   +   +   ++LH  V
Sbjct: 31  NHQLTDSSSSSSSGGNNRISPIILFIIVLLSVIFFICSILHLLV 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,866,421
Number of Sequences: 28952
Number of extensions: 251803
Number of successful extensions: 618
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)