Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0976.Seq
         (557 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.58 
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   2.4  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   7.2  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   9.5  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   9.5  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +2

Query: 2   GNPPFH*LPRKPLTVNTGNDECDSANARRQAVPGPAGVKL 121
           G PP    PR      TG   CD  N +     GPAGV L
Sbjct: 271 GLPPQVPSPRSQRRY-TGRATCDCPNCQEAERLGPAGVHL 309


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 278 GIGETHMRRIGHFKTASGNTMY 343
           G G+ H R   HF+++ GN ++
Sbjct: 84  GDGDKHDRHERHFESSFGNNLH 105


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 19  LTPKKTSNREHRK 57
           + PK+ S+R HRK
Sbjct: 253 MRPKRQSSRRHRK 265


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 375 PCRLESSRPEKYMVFPEAVLKCPILRICVSPMP 277
           P +LE +  ++ +    AV   P  R C  P P
Sbjct: 232 PPQLEVNERKENLTCQPAVPYVPFYRYCYRPYP 264


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 490  RMLSVQGLVFNLI 452
            RML +QG +F LI
Sbjct: 1095 RMLLIQGQIFGLI 1107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,083
Number of Sequences: 336
Number of extensions: 3113
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)