Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0976.Seq
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   2.5  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    25   5.7  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    25   10.0 
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   10.0 

>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 277 GHRRDTYAKNRTFQDSFGKYHVFLWSG*F*SAWSGFYYVSKD 402
           G+  D Y  N  + DS    H F  +G   + W  + YVS D
Sbjct: 561 GNFSDNYGNNVVYMDSLNHLHSFPNNG--LNGWVSYIYVSGD 600


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +3

Query: 231 LSIVEREMNLTTLVFWASARHICEESDISRQLREIPCISLVW 356
           LS++  E++   L F   AR +C+ + +S+  +E+    ++W
Sbjct: 110 LSLLPVEISFRILSF-LDARSLCQAAQVSKHWKELADDDVIW 150


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
          Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = -1

Query: 80 R*PNRI--HHFLCSRLEVF 30
          R PN I  HHFLC +L  F
Sbjct: 31 RYPNNIGIHHFLCEKLATF 49


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 354 WMILVCMEWVLLCQQR*INKFLGCNPVSECIISIKLNTKPCTLNILQVYASTL 512
           W++  C E  +  QQ      L  N V+E  +  KLN +  T   L++   TL
Sbjct: 192 WLLEHCSETEIPAQQLQALPSLSKNTVNESSLVRKLNLEKSTSRELRIPTQTL 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,845
Number of Sequences: 5004
Number of extensions: 51644
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)