Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0976.Seq
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0102 + 18013994-18014049,18014236-18014335,18014499-180147...    28   4.4  
04_03_0100 + 11232801-11232889,11233417-11233624,11233907-112341...    28   5.8  
04_01_0085 - 932461-932464,932656-933002,933387-935041,935084-93...    27   7.7  
03_01_0393 - 3062859-3062972,3063027-3063311,3063472-3063759,306...    27   7.7  

>05_04_0102 +
           18013994-18014049,18014236-18014335,18014499-18014783,
           18014854-18015023,18015382-18015510,18016109-18016205,
           18016318-18016395,18016474-18016635,18016673-18016771
          Length = 391

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 225 GKLSIVEREMNLTTLVF--WASARHICEESDISRQLREIPCIS 347
           G+LS      N+ TL+   W SA+ + + S     ++EIP +S
Sbjct: 94  GRLSSSSESENVLTLIMEDWESAKSVAKNSVTRGVIKEIPAVS 136


>04_03_0100 +
           11232801-11232889,11233417-11233624,11233907-11234129,
           11234214-11234221
          Length = 175

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 352 TREIHGISRSCLEMSDSSHMCLADAQNTNVVRFISRSTMLNFPGL 218
           +R + G   SC  +S   H  L  +   NVV     ST+  FP L
Sbjct: 120 SRVMAGNLESCFHLSQLMHPLLKTSGKGNVVNISGISTVTGFPSL 164


>04_01_0085 -
           932461-932464,932656-933002,933387-935041,935084-935882,
           936693-936707
          Length = 939

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 389 MSAKMNQQVPWLQSSLRVHHKYQIKHQALHA*HPASICFHSASSDEDIENFYGTL 553
           MS ++ +     Q  LR  H    +H   HA   +S C HS+S  E  +  Y  L
Sbjct: 241 MSTELVKMCIMYQLMLRQQHVDYTQHWDTHADTTSSTCCHSSSPWEIAQALYNNL 295


>03_01_0393 -
           3062859-3062972,3063027-3063311,3063472-3063759,
           3063844-3064161,3064232-3064415,3064504-3064659,
           3066394-3066620,3066734-3066804,3067090-3067534
          Length = 695

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +1

Query: 70  FG*RSAPGGTRAGWCEIGYRSSN 138
           FG RSA GG  AG    GY SSN
Sbjct: 60  FGKRSASGGAGAGGNSHGYSSSN 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,319,121
Number of Sequences: 37544
Number of extensions: 358127
Number of successful extensions: 759
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)