Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0976.Seq
         (557 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            25   1.7  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    25   2.2  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    25   2.2  
AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.         23   6.8  

>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 21/90 (23%), Positives = 44/90 (48%)
 Frame = +2

Query: 179 RAHHPIGTWKRCH*AREIKHCGTGDESHDISILGIGETHMRRIGHFKTASGNTMYFSGLD 358
           RAHH   + +R   A + K   +   S   + LG+G  H   + + + ++ +   FSGL+
Sbjct: 348 RAHHLPRSDQRAGVALDRKT--SSKASAKTTFLGLGALHTVILSNNRLSTVDHFTFSGLN 405

Query: 359 DSSLHGVGFIMSAKMNQQVPWLQSSLRVHH 448
             +L  + +   +++++Q     S+L+  H
Sbjct: 406 SLALLSLDYNRISRIDRQALRNHSALQELH 435


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 88   APSVSRIAFIISCVH 44
            AP V+R AF+I C H
Sbjct: 1110 APIVARAAFLIECAH 1124


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 130 FGSQFHTSRPGYRLAPSVSRI 68
           F SQ HT RP Y   P++  +
Sbjct: 284 FPSQDHTGRPAYWCTPAIEEL 304


>AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.
          Length = 93

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 310 SDSSHMCLADAQNTNVVRFISRSTMLNFPGLMTPLPGANRMMCSYRC 170
           S  S +C+     T       +ST L+F  L   +P + R++  Y C
Sbjct: 36  SRRSRLCIIALSLTLSSSSCKQSTSLSFVFLCCCVPSSERLIYYYMC 82


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,276
Number of Sequences: 2352
Number of extensions: 13319
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52142868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)