Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0976.Seq
         (557 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3461|AAF46899.2| 1218|Drosophila melanogaster CG3536-PA...    29   5.6  
AE014134-2806|AAF53586.1| 2042|Drosophila melanogaster CG15133-P...    28   7.4  

>AE013599-3461|AAF46899.2| 1218|Drosophila melanogaster CG3536-PA
           protein.
          Length = 1218

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
 Frame = +2

Query: 143 RRNKTNST-KTSIRAHHPI-GTWKRCH*AREIKHCGTGDESHDISILGIGETHMRRIGHF 316
           +RNK+    KT+     P+ GTW R           TG  S D ++ G G T +   GH 
Sbjct: 338 QRNKSRGRLKTAASGDQPLLGTWNR----------STGRGSQDNTLAGGGATSLAMGGH- 386

Query: 317 KTASGNTMYFSGLDDSSLHGVGFIMSAKMNQQVPWLQSSLRVHHKYQIKHQA 472
               GN  Y +G D               +QQ     ++ + HH YQ++H A
Sbjct: 387 NQYGGN--YCNGTDR---------YPRSRSQQQGHHNAAQQAHHPYQLQHSA 427


>AE014134-2806|AAF53586.1| 2042|Drosophila melanogaster CG15133-PA
           protein.
          Length = 2042

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -2

Query: 343 IHGISRSCLEMSDSSHMCLADAQNTNVVRFISRSTMLNFPGLMTPLPGANRMMCSYRCFG 164
           + GI+  CL  +D S+   AD Q  ++ R+   S         TP PG  R   SY+ F 
Sbjct: 626 VWGINARCLRGTDFSYGPWADRQRDHLYRYFYPSDWKEAEVTPTPQPGELR---SYQSFD 682

Query: 163 -AICFISSTS 137
             +C ++  +
Sbjct: 683 VTLCVLNEAT 692


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,021,606
Number of Sequences: 53049
Number of extensions: 598955
Number of successful extensions: 1334
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2151905496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)