Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0976.Seq
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56964-6|AAB54035.1|  848|Caenorhabditis elegans Hypothetical pr...    31   0.74 
AF043700-2|AAB97570.1|  283|Caenorhabditis elegans Collagen prot...    27   9.1  

>U56964-6|AAB54035.1|  848|Caenorhabditis elegans Hypothetical
           protein F52E4.7 protein.
          Length = 848

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 375 EWVLLCQQR*INKFLGCNPVSECIISIKLN-TKPCTLNILQVYASTLRLLMK 527
           EW  LC  +   +F   +P+S+ I  +K N  K C L +LQ Y  +  LL K
Sbjct: 368 EWHELCIPKQSQRFRALSPLSDLINWLKTNRPKACNL-VLQKYIDSTNLLYK 418


>AF043700-2|AAB97570.1|  283|Caenorhabditis elegans Collagen protein
           49 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 47  NTGNDECDSANARRQAVPGPAGVK 118
           N GND+C+ A   +    GP G K
Sbjct: 80  NVGNDQCNCAEPTKNCPAGPPGEK 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,729,393
Number of Sequences: 27780
Number of extensions: 304091
Number of successful extensions: 653
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)