Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0976.Seq
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    24   0.91 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.4  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 138 LVEEIKQIAPKHLYEHIILLAPGRGVIKPGKLSIVEREMNLTTLVFWASARHICEESD 311
           LV  +K++    +           G     + SIVER   L+  V +ASAR   +E++
Sbjct: 77  LVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLRSQENE 134


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 505 EAYTCRMLSVQGLVFNLILMM 443
           E Y   M SV   +FNLI MM
Sbjct: 234 EVYFLNMASVFMRIFNLICMM 254


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 137 TCRRNKTNSTKTSIRAH 187
           TC+RN  NST T+  A+
Sbjct: 218 TCQRNSNNSTITAGNAN 234


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 123 ANFTPAGPGTAW 88
           +N TP  PG AW
Sbjct: 909 SNVTPRSPGRAW 920


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 117  NWLPKL*LVEEIKQIAPKHLYEHIILLAPGRGV 215
            NW PK+  VE   + A        ++   GRG+
Sbjct: 1153 NWTPKMMAVEPTDKQANSKTRRQEMMREAGRGI 1185


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 414 FLGCNPVSECIISIKLNTKPCTL 482
           F+   P +   I IK  T+ C+L
Sbjct: 77  FIERGPANRMYIEIKFTTRDCSL 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,423
Number of Sequences: 438
Number of extensions: 3655
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)