Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0976.Seq
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15320.1 68417.m02344 cellulose synthase family protein simil...    31   0.69 
At5g02070.1 68418.m00128 protein kinase-related contains eukaryo...    30   1.2  
At4g15290.1 68417.m02341 cellulose synthase family protein simil...    29   2.8  
At1g55510.1 68414.m06350 2-oxoisovalerate dehydrogenase, putativ...    28   3.7  
At5g44940.1 68418.m05512 F-box family protein contains F-box dom...    28   4.9  

>At4g15320.1 68417.m02344 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -2
           [gi:9622876], -1 [gi:9622874]
          Length = 828

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
 Frame = +3

Query: 234 SIVEREMNLTTLVF-----WASARHICEESDI--SRQLREIPCISLVWMILVCMEW 380
           S + R ++LT LV      W    H+CE + I     L E  C S +W+I+ C++W
Sbjct: 19  SYILRIVDLTILVLLFSLLWYRILHMCENNTIWLVAFLCE-SCFSFMWLIITCIKW 73


>At5g02070.1 68418.m00128 protein kinase-related contains eukaryotic
           protein kinase domain, INTERPRO:IPR000719
          Length = 657

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 297 CEESDISRQLREIPCISLVWMILVCMEWVLL-CQQR*INKFLGCNPVSECIISIKLNTKP 473
           C  +D+S+Q  E+    L + I      +LL C Q  +   + C+P S C   IK N  P
Sbjct: 110 CISADVSKQGLELDP-HLPFSITSSNTILLLNCSQAMLQAPIDCSPTSLCYSYIKNNASP 168

Query: 474 CT 479
           C+
Sbjct: 169 CS 170


>At4g15290.1 68417.m02341 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -4
           [gi:9622880]
          Length = 757

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 339 CISLVWMILVCMEW 380
           C SLVW+I  C++W
Sbjct: 60  CFSLVWLIFTCLKW 73


>At1g55510.1 68414.m06350 2-oxoisovalerate dehydrogenase, putative /
           3-methyl-2-oxobutanoate dehydrogenase, putative /
           branched-chain alpha-keto acid dehydrogenase E1 beta
           subunit, putative strong similarity to branched chain
           alpha-keto acid dehydrogenase E1 beta subunit
           [Arabidopsis thaliana] GI:7021286; contains Pfam
           profiles PF02779: Transketolase, pyridine binding
           domain, PF02780: Transketolase, C-terminal domain
          Length = 352

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 165 PKHLYEHIILLAPGRGVIKPGKLSIVEREMNLTTLVFWASARHICEESDISRQLREIPC 341
           PK LY   +   P    + P   + V RE N  TLV W +   + E++ +  +   I C
Sbjct: 201 PKWLYRQAVEEVPEHDYMIPLSEAEVIREGNDITLVGWGAQLTVMEQACLDAEKEGISC 259


>At5g44940.1 68418.m05512 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 377

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -3

Query: 369 RLESSRPEKYMVFPEAVLKCPILRICVSPMPKILMS*DSSPVPQCLIS 226
           R  SS  +    F E+   CP L+  +   P    + D   VPQCLIS
Sbjct: 261 RFSSSSLQLLPTFLESCPACPNLKNLIMEFPFEPKNIDFHKVPQCLIS 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,977,175
Number of Sequences: 28952
Number of extensions: 281487
Number of successful extensions: 574
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)