BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0975.Seq (565 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 178 8e-44 UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 174 1e-42 UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 153 3e-36 UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 150 3e-35 UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 149 6e-35 UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 136 3e-31 UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 132 5e-30 UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 129 4e-29 UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 126 4e-28 UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 125 6e-28 UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 120 3e-26 UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 94 2e-18 UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 84 2e-15 UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 82 1e-14 UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 79 7e-14 UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 77 2e-13 UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 73 5e-12 UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 73 5e-12 UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 69 8e-11 UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 68 2e-10 UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 65 9e-10 UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 64 2e-09 UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 63 4e-09 UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 62 7e-09 UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 61 2e-08 UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 61 2e-08 UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 58 2e-07 UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 57 2e-07 UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 55 1e-06 UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 55 1e-06 UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 50 4e-05 UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 49 7e-05 UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 46 6e-04 UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 43 0.004 UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 34 2.6 UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 6.1 UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to Tyrosine-p... 32 8.1 UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 32 8.1 UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 32 8.1 UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative; ... 32 8.1 >UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila melanogaster (Fruit fly) Length = 261 Score = 178 bits (433), Expect = 8e-44 Identities = 80/104 (76%), Positives = 90/104 (86%) Frame = +2 Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433 +EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRYPD Sbjct: 92 LEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPD 151 Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 PLI NDS+Q+DIA+ KI D+IKF SGNLCMITGGRNLGRVGT+ Sbjct: 152 PLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTV 195 Score = 161 bits (390), Expect = 1e-38 Identities = 73/87 (83%), Positives = 80/87 (91%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 HLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV Q Sbjct: 8 HLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQ 67 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRR 263 RL+KVDGKVRTDPTYPAG+MDV++L + Sbjct: 68 RLVKVDGKVRTDPTYPAGYMDVITLEK 94 >UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=137; Eukaryota|Rep: 40S ribosomal protein S4, X isoform - Homo sapiens (Human) Length = 263 Score = 174 bits (423), Expect = 1e-42 Identities = 76/104 (73%), Positives = 89/104 (85%) Frame = +2 Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433 I+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RTIRYPD Sbjct: 92 IDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPD 151 Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 PLIKVND+IQ+D+ T KI DFIKF +GNLCM+TGG NLGR+G I Sbjct: 152 PLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVI 195 Score = 155 bits (375), Expect = 9e-37 Identities = 70/85 (82%), Positives = 77/85 (90%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 HLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q Sbjct: 8 HLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQ 67 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257 R IK+DGKVRTD TYPAGFMDV+S+ Sbjct: 68 RFIKIDGKVRTDITYPAGFMDVISI 92 >UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein S4, X isoform (LOC126235), mRNA; n=1; Takifugu rubripes|Rep: similar to 40S ribosomal protein S4, X isoform (LOC126235), mRNA - Takifugu rubripes Length = 291 Score = 153 bits (371), Expect = 3e-36 Identities = 69/85 (81%), Positives = 76/85 (89%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 HLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q Sbjct: 8 HLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQ 67 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257 R IK+DGKVRTD TYP GFMDV+S+ Sbjct: 68 RFIKIDGKVRTDITYPTGFMDVISI 92 Score = 120 bits (290), Expect(2) = 3e-36 Identities = 50/76 (65%), Positives = 64/76 (84%) Frame = +2 Query: 338 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKF*SGN 517 +YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF + N Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211 Query: 518 LCMITGGRNLGRVGTI 565 +CM+TGG NLGR+G I Sbjct: 212 MCMVTGGANLGRIGVI 227 Score = 54.0 bits (124), Expect(2) = 3e-36 Identities = 24/29 (82%), Positives = 26/29 (89%) Frame = +2 Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAK 340 I+KT E FRLIYDVKGRFT+HRIT EEAK Sbjct: 92 IDKTGEHFRLIYDVKGRFTVHRITAEEAK 120 >UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis thaliana (Mouse-ear cress) Length = 262 Score = 150 bits (363), Expect = 3e-35 Identities = 68/104 (65%), Positives = 82/104 (78%) Frame = +2 Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433 I KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPD Sbjct: 92 IPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPD 151 Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 PLIK ND+I+LD+ KI++FIKF GN+ M+TGGRN GRVG I Sbjct: 152 PLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVI 195 Score = 147 bits (356), Expect = 2e-34 Identities = 66/85 (77%), Positives = 75/85 (88%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ Q Sbjct: 8 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQ 67 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257 R I+VDGKVRTD TYPAGFMDVVS+ Sbjct: 68 RHIQVDGKVRTDKTYPAGFMDVVSI 92 >UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED: similar to 40S ribosomal protein S4, X isoform - Canis familiaris Length = 240 Score = 149 bits (360), Expect = 6e-35 Identities = 64/92 (69%), Positives = 77/92 (83%) Frame = +2 Query: 290 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 469 D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135 Query: 470 IATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 + T KI DF KF +GNLCM+TGG NLGR+G I Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVI 167 Score = 116 bits (280), Expect = 3e-25 Identities = 53/68 (77%), Positives = 58/68 (85%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 HLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q Sbjct: 8 HLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQ 67 Query: 183 RLIKVDGK 206 IK+DGK Sbjct: 68 HFIKMDGK 75 >UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal protein S4 - Entamoeba histolytica HM-1:IMSS Length = 326 Score = 136 bits (330), Expect = 3e-31 Identities = 60/92 (65%), Positives = 70/92 (76%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV IVK Sbjct: 8 HLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKN 67 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRRLMNCF 278 R IK+DGK+RTD YP GFMDV+S+ R F Sbjct: 68 RTIKIDGKIRTDTRYPVGFMDVLSIPRTKENF 99 Score = 123 bits (296), Expect = 3e-27 Identities = 54/104 (51%), Positives = 76/104 (73%) Frame = +2 Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433 I +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRTIRYP Sbjct: 92 IPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYPH 151 Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 P ++ ND+I+L++ T KI+DF+KF GN M+ GG +GRVG I Sbjct: 152 PELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGVI 195 >UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal protein S4, X isoform; n=1; Macaca mulatta|Rep: PREDICTED: similar to 40S ribosomal protein S4, X isoform - Macaca mulatta Length = 244 Score = 132 bits (319), Expect = 5e-30 Identities = 61/114 (53%), Positives = 80/114 (70%) Frame = +2 Query: 224 LSCWIYGCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 403 L WI I+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV Sbjct: 92 LPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVI 151 Query: 404 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 HD T+R+PD LIKVND+IQ+D+ T KI +KF +GNLC++TGG N GR+G I Sbjct: 152 HDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWGRIGVI 204 Score = 122 bits (294), Expect = 6e-27 Identities = 60/88 (68%), Positives = 69/88 (78%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI Q Sbjct: 19 HLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQ 77 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRRL 266 IKVDGK+RTD P MDV+S+ ++ Sbjct: 78 WFIKVDGKIRTDNNLPYWIMDVISIDKM 105 >UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia theta|Rep: 40S ribosomal protein S4 - Guillardia theta (Cryptomonas phi) Length = 257 Score = 129 bits (312), Expect = 4e-29 Identities = 57/102 (55%), Positives = 78/102 (76%) Frame = +2 Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433 I+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTIR+P+ Sbjct: 92 IKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRFPN 151 Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVG 559 LIK NDSI LD+ K++DFIKF G+LC++ G N+GR+G Sbjct: 152 LLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIG 193 Score = 115 bits (276), Expect = 9e-25 Identities = 50/86 (58%), Positives = 66/86 (76%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 H KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I+K+ Sbjct: 8 HYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILKK 67 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLR 260 I VDGKVR D +PAG MDV+S++ Sbjct: 68 NEIYVDGKVRADKNFPAGVMDVISIK 93 >UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing protein; n=1; Tetrahymena thermophila SB210|Rep: Ribosomal family S4e containing protein - Tetrahymena thermophila SB210 Length = 370 Score = 126 bits (304), Expect = 4e-28 Identities = 55/104 (52%), Positives = 74/104 (71%) Frame = +2 Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433 IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR+P+ Sbjct: 204 IEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPN 263 Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 P IK+ D+++ D+ KI +F SGN+C I G N+GRVG I Sbjct: 264 PEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGII 307 Score = 80.6 bits (190), Expect = 2e-14 Identities = 53/123 (43%), Positives = 66/123 (53%), Gaps = 31/123 (25%) Frame = +3 Query: 3 HLKRLNAPKAWMLD-------------------------KLGGVY----APRPSTGPHKL 95 HLKR+NAPK+WML+ KL +Y A RPS GPHKL Sbjct: 89 HLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPSQGPHKL 148 Query: 96 RECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGFMDVVSLRRLM 269 RE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G MDVV + + Sbjct: 149 RESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKTD 208 Query: 270 NCF 278 F Sbjct: 209 QSF 211 >UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4; Trichomonas vaginalis G3|Rep: 40S ribosomal protein S4-C, putative - Trichomonas vaginalis G3 Length = 269 Score = 125 bits (302), Expect = 6e-28 Identities = 58/92 (63%), Positives = 68/92 (73%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+ Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRRLMNCF 278 RL+KVDGKVRT+ YP G MDV+ L + F Sbjct: 82 RLVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113 Score = 120 bits (289), Expect = 2e-26 Identities = 52/102 (50%), Positives = 75/102 (73%) Frame = +2 Query: 260 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 439 K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGRTI Y DP Sbjct: 108 KSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPS 167 Query: 440 IKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 ++V+D+++ +I T ++ IKF G++ M+T G N+GRVGTI Sbjct: 168 VRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGTI 209 >UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania major Length = 273 Score = 120 bits (288), Expect = 3e-26 Identities = 55/85 (64%), Positives = 63/85 (74%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 HLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I++Q Sbjct: 5 HLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQ 64 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257 L+ VD R D YPAGFMDVV + Sbjct: 65 GLVHVDNHPRRDGKYPAGFMDVVEI 89 Score = 99 bits (238), Expect = 4e-20 Identities = 48/104 (46%), Positives = 63/104 (60%) Frame = +2 Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433 I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG IRYPD Sbjct: 89 IPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRYPD 148 Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 P + D+I ++ K +D IK G ++TGG N GR+G I Sbjct: 149 PHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGRIGEI 192 >UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 - Encephalitozoon cuniculi Length = 268 Score = 94.3 bits (224), Expect = 2e-18 Identities = 42/87 (48%), Positives = 59/87 (67%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+ I+ + Sbjct: 8 HLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAE 67 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRR 263 + IKV+G+VRT+ +P G DVVS+ + Sbjct: 68 KNIKVNGRVRTNSHFPVGLFDVVSIEK 94 Score = 78.2 bits (184), Expect = 1e-13 Identities = 39/104 (37%), Positives = 66/104 (63%) Frame = +2 Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433 IEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G +IR+ D Sbjct: 92 IEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSIRFCD 150 Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 P I + +I++ T+K++++I + ++ G+ GRVG I Sbjct: 151 PAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI 194 >UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methanopyrus kandleri|Rep: 30S ribosomal protein S4e - Methanopyrus kandleri Length = 260 Score = 83.8 bits (198), Expect = 2e-15 Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 1/88 (1%) Frame = +3 Query: 3 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 179 H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E KI+ Sbjct: 11 HVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIIT 70 Query: 180 QRLIKVDGKVRTDPTYPAGFMDVVSLRR 263 + I VDG VR +P +P G MDVV + R Sbjct: 71 RGEIYVDGVVRKEPKFPVGIMDVVEIPR 98 Score = 39.9 bits (89), Expect = 0.040 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 14/118 (11%) Frame = +2 Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT--IRY 427 I +T + +R++ + R + I+ EEA+ K+C++K + HDG+ + Sbjct: 96 IPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEI 155 Query: 428 PDP------LIKVNDSIQLDI------ATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 DP + V DS+ L++ + K++D I F G GR+ G VG + Sbjct: 156 EDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVGRV 213 >UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum aerophilum Length = 238 Score = 81.8 bits (193), Expect = 1e-14 Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 1/86 (1%) Frame = +3 Query: 3 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 179 HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+ Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62 Query: 180 QRLIKVDGKVRTDPTYPAGFMDVVSL 257 + +KVDG VR D +P G MDV+ + Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEI 88 Score = 37.9 bits (84), Expect = 0.16 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 3/107 (2%) Frame = +2 Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR---TIR 424 I T E++R++ D + + I+ EEA KL +V+ L HDGR T Sbjct: 88 IVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTL 147 Query: 425 YPDPLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 IK DS+ D+ I I G ++ G N+G GT+ Sbjct: 148 EAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194 >UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga maquilingensis IC-167|Rep: Ribosomal protein S4E - Caldivirga maquilingensis IC-167 Length = 237 Score = 79.0 bits (186), Expect = 7e-14 Identities = 35/85 (41%), Positives = 51/85 (60%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ + Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257 +KVDGKVR D YP G MDV+ L Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIEL 87 Score = 35.9 bits (79), Expect = 0.65 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 3/103 (2%) Frame = +2 Query: 266 NELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP--- 436 NE +R+I D RI EA K+C+++ L HDGR I Sbjct: 91 NEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIVDQDEGR 150 Query: 437 LIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 + S+ +++ K+MD+ + G N+GR GT+ Sbjct: 151 KYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTL 193 >UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryarchaeota|Rep: 30S ribosomal protein S4e - Methanococcus maripaludis Length = 244 Score = 77.4 bits (182), Expect = 2e-13 Identities = 37/85 (43%), Positives = 52/85 (61%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 HLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E KI++ Sbjct: 9 HLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQT 68 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257 I +DG R + +PAG MDV+S+ Sbjct: 69 GKILIDGLKRKEYKHPAGLMDVLSI 93 Score = 42.7 bits (96), Expect = 0.006 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 10/114 (8%) Frame = +2 Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRVATGPKNVPYLVTHDGRT--- 418 I + +E + +++D GR ++ + ++ KLCK+ K V G N+ L HDGR Sbjct: 93 IPEMDETYLVLFDESGRISLKKT--DKTDVKLCKIVNKTVVKGG-NIQ-LNLHDGRNQIV 148 Query: 419 -----IRYPDPLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 + + + K DS+ + I I + F G L ITGG+++G I Sbjct: 149 KVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKI 202 >UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E, central - Thermofilum pendens (strain Hrk 5) Length = 251 Score = 72.9 bits (171), Expect = 5e-12 Identities = 35/85 (41%), Positives = 51/85 (60%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E +I+ Sbjct: 11 HLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILAS 70 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257 R+I+VDG+V TD +P G MDV+ + Sbjct: 71 RVIEVDGRVVTDYKFPVGLMDVLHI 95 Score = 47.2 bits (107), Expect = 3e-04 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 8/105 (7%) Frame = +2 Query: 275 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI-------RYPD 433 +R++ D + I PEEA YKL +++R T HDGR + Y Sbjct: 102 YRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNVLIRKGSEAYST 161 Query: 434 PL-IKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 + K D++ + I I+ + F G L ++ GRN+G +G I Sbjct: 162 AISYKTYDALLITIPRQSIVSHVPFEVGTLAIVVDGRNVGFMGRI 206 >UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfurococcales|Rep: 30S ribosomal protein S4e - Aeropyrum pernix Length = 253 Score = 72.9 bits (171), Expect = 5e-12 Identities = 34/84 (40%), Positives = 50/84 (59%) Frame = +3 Query: 6 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 185 LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K++ + Sbjct: 10 LKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEG 69 Query: 186 LIKVDGKVRTDPTYPAGFMDVVSL 257 +VDG VR D +P GFMDV+ + Sbjct: 70 HFRVDGVVRKDYKFPVGFMDVIEV 93 Score = 54.0 bits (124), Expect = 2e-06 Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 9/110 (8%) Frame = +2 Query: 263 TNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI--RYPD 433 T E FR++ Y VK F +H I EE K +++ T L HDGR I R D Sbjct: 96 TGEKFRMLPYPVKF-FKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKD 154 Query: 434 P------LIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 P + + D++ + + +I IKF G + +I GGRN+GRVG + Sbjct: 155 PRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVV 204 >UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarchaeota|Rep: 30S ribosomal protein S4E - Uncultured methanogenic archaeon RC-I Length = 234 Score = 68.9 bits (161), Expect = 8e-11 Identities = 32/85 (37%), Positives = 48/85 (56%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ + Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257 + VDGKVR D Y G D +S+ Sbjct: 65 GKVLVDGKVRKDYRYTVGMFDTISI 89 Score = 43.6 bits (98), Expect = 0.003 Identities = 28/104 (26%), Positives = 48/104 (46%) Frame = +2 Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433 I N +R++ + G+F H + +A K+CK+ L HDG T+ + Sbjct: 89 IPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTALRGGKIQLNLHDGTTMIASN 146 Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 K DS+ L + KI + G+L M+T G++ G +G + Sbjct: 147 DY-KTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKV 189 >UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermoplasma|Rep: 30S ribosomal protein S4e - Thermoplasma acidophilum Length = 235 Score = 67.7 bits (158), Expect = 2e-10 Identities = 38/105 (36%), Positives = 53/105 (50%) Frame = +2 Query: 251 LIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 430 +IE E +R++Y+ +G + + T E A KL KV+ P N L THDGRT Sbjct: 85 VIEINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITD 144 Query: 431 DPLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 D KV D + + KI + IK GN IT G ++ + GTI Sbjct: 145 DKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTI 189 Score = 47.6 bits (108), Expect = 2e-04 Identities = 24/83 (28%), Positives = 42/83 (50%) Frame = +3 Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188 KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65 Query: 189 IKVDGKVRTDPTYPAGFMDVVSL 257 +KVDGK + + GFMDV+ + Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEI 88 >UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobacteriaceae|Rep: Ribosomal protein S4e - Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) Length = 242 Score = 65.3 bits (152), Expect = 9e-10 Identities = 29/85 (34%), Positives = 44/85 (51%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 HLK APK W + + +PS G H + L L + +R+ LK A E +I+ Sbjct: 9 HLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINS 68 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257 + VDG+V D +P GFMD++ + Sbjct: 69 GNVLVDGRVIKDYKFPVGFMDIIEI 93 Score = 60.1 bits (139), Expect = 4e-08 Identities = 33/104 (31%), Positives = 55/104 (52%) Frame = +2 Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433 I KT E++R++ D KGR +++I EE KLCK+ +T + HDG+ + + Sbjct: 93 IPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDE 150 Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 V D I L + +I + + G +ITGG++ G +GT+ Sbjct: 151 NDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGTV 194 >UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolobaceae|Rep: 30S ribosomal protein S4e - Sulfolobus acidocaldarius Length = 244 Score = 64.1 bits (149), Expect = 2e-09 Identities = 34/85 (40%), Positives = 45/85 (52%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+ Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257 + VDGKVR D YP G MDVV + Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEI 87 Score = 37.5 bits (83), Expect = 0.21 Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 5/101 (4%) Frame = +2 Query: 278 RLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP-DPLIKVN- 451 R+I D T I+ E+AKYK ++ T V L DGR I + L + N Sbjct: 95 RIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEELSQYNL 154 Query: 452 ---DSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 ++++++ KI G MI GGRN G G I Sbjct: 155 PTLTTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKI 195 >UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowiella natans|Rep: 40S ribosomal protein S4 - Bigelowiella natans (Pedinomonas minutissima) (Chlorarachnion sp.(strain CCMP 621)) Length = 242 Score = 63.3 bits (147), Expect = 4e-09 Identities = 30/100 (30%), Positives = 54/100 (54%) Frame = +2 Query: 266 NELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIK 445 N+ +R++ G+ T++ I E K+CKV ++ ++T D R ++ IK Sbjct: 96 NKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIK 155 Query: 446 VNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 V DS+ + +I+ +KF G+LC+IT G++LG + I Sbjct: 156 VEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVI 195 Score = 40.3 bits (90), Expect = 0.030 Identities = 22/84 (26%), Positives = 39/84 (46%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 H KR+++ K G++ + S+GPH + + L+ ++ A E K+VK Sbjct: 8 HQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKT 67 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVS 254 + V+GK +P MD +S Sbjct: 68 GFLYVNGKKCLSHKFPISLMDTIS 91 >UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental samples|Rep: Ribosomal protein S4 - uncultured marine group II euryarchaeote DeepAnt-JyKC7 Length = 232 Score = 62.5 bits (145), Expect = 7e-09 Identities = 28/85 (32%), Positives = 48/85 (56%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++ Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257 R + VDG++ TD G MDV+++ Sbjct: 65 RQVLVDGRIETDLGRGVGLMDVLTV 89 Score = 44.4 bits (100), Expect = 0.002 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Frame = +2 Query: 275 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD-PLIKVN 451 FR I DV G+ I+ + A KLC+V +T + HDGR I D L Sbjct: 94 FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVSDAKLYDSG 153 Query: 452 DSIQLDIATTKIMDFIKF*SGNLCMITGGRNLG 550 D++ + + + F G +TGG ++G Sbjct: 154 DTLVISLPDQSVAGHHPFSKGATAYLTGGSHIG 186 >UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococcoides burtonii DSM 6242|Rep: Ribosomal protein S4E - Methanococcoides burtonii (strain DSM 6242) Length = 236 Score = 60.9 bits (141), Expect = 2e-08 Identities = 25/85 (29%), Positives = 44/85 (51%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 H KR++ PK+W + K + GPH + +PL + LR+ L E +++ + Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257 + VDG R D +P G MD++++ Sbjct: 64 GNVLVDGVARKDLRFPVGLMDIITI 88 Score = 46.4 bits (105), Expect = 5e-04 Identities = 31/104 (29%), Positives = 52/104 (50%) Frame = +2 Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433 I N +R++ D K R ++++ A KLC+++ + + + +DG I + Sbjct: 88 IPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIEGKTSIKEGKIQMRLNDGVNIIGSN 146 Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 DSI L + K++ IK+ GNL MI GG + G VG+I Sbjct: 147 NY-NTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGSHAGEVGSI 189 >UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarchaeota|Rep: 30S ribosomal protein S4e - Methanosarcina mazei (Methanosarcina frisia) Length = 235 Score = 60.9 bits (141), Expect = 2e-08 Identities = 29/85 (34%), Positives = 44/85 (51%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ + Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257 + VDG R D +P G DV++L Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITL 87 Score = 51.6 bits (118), Expect = 1e-05 Identities = 30/100 (30%), Positives = 48/100 (48%) Frame = +2 Query: 266 NELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIK 445 NE +R++ D KGR ++++ KLC++ T L +DG I + Sbjct: 91 NEAYRMLQDEKGRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNILGSNDY-G 148 Query: 446 VNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 DS+ L I ++ +KF GNL M+ GG++ G G I Sbjct: 149 TKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKI 188 >UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139; n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical protein Faci_03001139 - Ferroplasma acidarmanus fer1 Length = 241 Score = 57.6 bits (133), Expect = 2e-07 Identities = 26/91 (28%), Positives = 50/91 (54%) Frame = +3 Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188 K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ + Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66 Query: 189 IKVDGKVRTDPTYPAGFMDVVSLRRLMNCFV 281 +KVDG++ D +P GFMDV+S+ L N ++ Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97 Score = 48.8 bits (111), Expect = 9e-05 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 1/96 (1%) Frame = +2 Query: 281 LIYDVKGRFTIHRITPEEAKYKLCKV-KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 457 ++YD KG+ I + P KL KV K+ G + L HDG+TI I +D Sbjct: 98 IVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKIQ-LGFHDGKTIVTDRKDINTSDV 156 Query: 458 IQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 + + I +I + +K G+ ITGG ++G + TI Sbjct: 157 LLMKIPDLEIENVLKIAEGDKVFITGGSHVGELATI 192 >UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Methanocorpusculum labreanum Z|Rep: Ribosomal protein S4E, central - Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) Length = 239 Score = 57.2 bits (132), Expect = 2e-07 Identities = 28/86 (32%), Positives = 47/86 (54%) Frame = +3 Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188 KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63 Query: 189 IKVDGKVRTDPTYPAGFMDVVSLRRL 266 + ++G + TD D++S ++ Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKI 89 >UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Methanomicrobiales|Rep: Ribosomal protein S4E, central - Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) Length = 242 Score = 54.8 bits (126), Expect = 1e-06 Identities = 30/88 (34%), Positives = 48/88 (54%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 +LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+ Q Sbjct: 4 YLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILHQ 62 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRRL 266 R + V+G+ D G D+VS+ +L Sbjct: 63 RDVLVNGRACKDSRMGLGVFDIVSIPKL 90 Score = 52.4 bits (120), Expect = 7e-06 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 5/115 (4%) Frame = +2 Query: 236 IYGCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 415 ++ I K + +R+ DVKG I E AK +LCK++ T L G Sbjct: 81 VFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGA 140 Query: 416 TIRYPDPLIKVNDSIQLDIATT-----KIMDFIKF*SGNLCMITGGRNLGRVGTI 565 + D K DS+ + + T +I+D + GN+ MI GG++ G+VG I Sbjct: 141 NV-LADNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVAMIVGGKHSGKVGRI 194 >UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e - Nanoarchaeum equitans Length = 234 Score = 54.8 bits (126), Expect = 1e-06 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Frame = +3 Query: 3 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 179 HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV ++ Sbjct: 8 HLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLN 67 Query: 180 QRLIKVDGKVRTDPTYPAGFMDVVSL 257 + VDG+ D +P G DV+++ Sbjct: 68 NGKVLVDGRPIKDYKFPVGLFDVLAI 93 >UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobacteriaceae|Rep: 30S ribosomal protein S4E - Haloarcula marismortui (Halobacterium marismortui) Length = 234 Score = 50.0 bits (114), Expect = 4e-05 Identities = 24/84 (28%), Positives = 43/84 (51%) Frame = +3 Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182 H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + + Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62 Query: 183 RLIKVDGKVRTDPTYPAGFMDVVS 254 + ++GK +D P G D+++ Sbjct: 63 DNVLINGKAISDEERPVGMFDILA 86 >UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picrophilus torridus|Rep: 30S ribosomal protein S4e - Picrophilus torridus Length = 234 Score = 49.2 bits (112), Expect = 7e-05 Identities = 32/93 (34%), Positives = 44/93 (47%) Frame = +2 Query: 287 YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQL 466 YD KG+ I E KL +VK + HDG T+ IK DS+ + Sbjct: 97 YDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLV 156 Query: 467 DIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565 I +I+D +KF GN ITGG ++G + TI Sbjct: 157 KIPKKEIVDVLKFAPGNRVFITGGSHVGEIATI 189 Score = 46.4 bits (105), Expect = 5e-04 Identities = 26/83 (31%), Positives = 42/83 (50%) Frame = +3 Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188 K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65 Query: 189 IKVDGKVRTDPTYPAGFMDVVSL 257 + VDGKV + GFMD +++ Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTV 88 >UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum symbiosum Length = 238 Score = 46.0 bits (104), Expect = 6e-04 Identities = 27/84 (32%), Positives = 37/84 (44%) Frame = +3 Query: 6 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 185 LKR AP W + + G + G H +P + LR+ L T E K + Sbjct: 10 LKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIYSG 69 Query: 186 LIKVDGKVRTDPTYPAGFMDVVSL 257 ++VDG RT + G MDVV L Sbjct: 70 NVEVDGVKRTSLHHGIGLMDVVEL 93 >UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1; Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA sequence - Ostreococcus tauri Length = 197 Score = 43.2 bits (97), Expect = 0.004 Identities = 29/97 (29%), Positives = 48/97 (49%) Frame = -1 Query: 544 VTASRDHTQVPRSKLDEVHNLRSCNV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRH 365 V + DH Q +LD + +L +V +G+ D + V +GAA+++ R+ L Sbjct: 93 VVTTGDHAQSADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELL 152 Query: 364 TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISLLN 254 QLVL D V ES+L ++D + FI+L + Sbjct: 153 APHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIALFD 189 >UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514; n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical protein Faci_03000514 - Ferroplasma acidarmanus fer1 Length = 317 Score = 33.9 bits (74), Expect = 2.6 Identities = 18/55 (32%), Positives = 28/55 (50%) Frame = -3 Query: 251 DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALAQLV 87 +NI + I + N P E LFH F DFVSG ++ I + + + +AQ + Sbjct: 58 ENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIAQFI 112 >UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA synthetase - Mimivirus Length = 509 Score = 32.7 bits (71), Expect = 6.1 Identities = 14/54 (25%), Positives = 32/54 (59%) Frame = +3 Query: 36 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 197 +LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L + Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474 >UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to Tyrosine-protein phosphatase non-receptor type 13 (Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1) (PTP-BAS) (Protein-tyrosine phosphatase PTPL1) (Fas-associated protein-tyrosine phosphatase 1) (FAP-1); n=1; Tribolium castaneum|Rep: PREDICTED: similar to Tyrosine-protein phosphatase non-receptor type 13 (Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1) (PTP-BAS) (Protein-tyrosine phosphatase PTPL1) (Fas-associated protein-tyrosine phosphatase 1) (FAP-1) - Tribolium castaneum Length = 768 Score = 32.3 bits (70), Expect = 8.1 Identities = 15/45 (33%), Positives = 28/45 (62%) Frame = +2 Query: 395 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKF*SGNLCMI 529 + DGR ++ D +IKVND ++TT+I+D ++ G +C++ Sbjct: 708 VAARDGR-LKPGDRVIKVNDESVEHLSTTEIIDLLRIVRGPVCIV 751 >UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tuberculosis complex|Rep: PROBABLE OXIDASE - Mycobacterium bovis Length = 504 Score = 32.3 bits (70), Expect = 8.1 Identities = 17/37 (45%), Positives = 22/37 (59%) Frame = -2 Query: 114 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASN 4 PG RAT GD + VSV T+R PTS+ W ++ N Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRN 128 >UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep: Sensor protein - Pseudomonas mendocina ymp Length = 783 Score = 32.3 bits (70), Expect = 8.1 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = -1 Query: 463 LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLR 326 L+ I+ F + + + G + QVR+ILR+GRH L VL + R Sbjct: 420 LNSILGFAQLLEMDRGTPAQQAQVRHILRAGRHLLGLINEVLDIAR 465 >UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative; n=2; Trichomonas vaginalis G3|Rep: Ser/Thr protein phosphatase, putative - Trichomonas vaginalis G3 Length = 475 Score = 32.3 bits (70), Expect = 8.1 Identities = 21/61 (34%), Positives = 30/61 (49%) Frame = -1 Query: 472 NV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALN 293 NV + I + +WV G RY+ R R+ H + + +LL D VDCE+ LN Sbjct: 400 NVTRETINNAAEWVRTT-GEGQWRYRERIYTRADEHNAFYYCALKALLPDDIVDCENKLN 458 Query: 292 I 290 I Sbjct: 459 I 459 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 631,349,146 Number of Sequences: 1657284 Number of extensions: 13189245 Number of successful extensions: 36931 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 35645 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 36918 length of database: 575,637,011 effective HSP length: 96 effective length of database: 416,537,747 effective search space used: 37904934977 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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