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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0975.Seq
         (565 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo...   178   8e-44
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=...   174   1e-42
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein...   153   3e-36
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar...   150   3e-35
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso...   149   6e-35
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E...   136   3e-31
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso...   132   5e-30
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard...   129   4e-29
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ...   126   4e-28
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n...   125   6e-28
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot...   120   3e-26
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal...    94   2e-18
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano...    84   2e-15
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac...    82   1e-14
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ...    79   7e-14
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar...    77   2e-13
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th...    73   5e-12
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu...    73   5e-12
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc...    69   8e-11
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop...    68   2e-10
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact...    65   9e-10
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo...    64   2e-09
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi...    63   4e-09
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta...    62   7e-09
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc...    61   2e-08
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc...    61   2e-08
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011...    58   2e-07
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me...    57   2e-07
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me...    55   1e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc...    55   1e-06
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac...    50   4e-05
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph...    49   7e-05
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote...    46   6e-04
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n...    43   0.004
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005...    34   2.6  
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha...    33   6.1  
UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to Tyrosine-p...    32   8.1  
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu...    32   8.1  
UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S...    32   8.1  
UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative; ...    32   8.1  

>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
           Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
           melanogaster (Fruit fly)
          Length = 261

 Score =  178 bits (433), Expect = 8e-44
 Identities = 80/104 (76%), Positives = 90/104 (86%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
           +EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   G K VP+LVTHDGRTIRYPD
Sbjct: 92  LEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPD 151

Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           PLI  NDS+Q+DIA+ KI D+IKF SGNLCMITGGRNLGRVGT+
Sbjct: 152 PLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTV 195



 Score =  161 bits (390), Expect = 1e-38
 Identities = 73/87 (83%), Positives = 80/87 (91%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV Q
Sbjct: 8   HLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQ 67

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRR 263
           RL+KVDGKVRTDPTYPAG+MDV++L +
Sbjct: 68  RLVKVDGKVRTDPTYPAGYMDVITLEK 94


>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
           n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
           isoform - Homo sapiens (Human)
          Length = 263

 Score =  174 bits (423), Expect = 1e-42
 Identities = 76/104 (73%), Positives = 89/104 (85%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
           I+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++  G K +P+LVTHD RTIRYPD
Sbjct: 92  IDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPD 151

Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           PLIKVND+IQ+D+ T KI DFIKF +GNLCM+TGG NLGR+G I
Sbjct: 152 PLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVI 195



 Score =  155 bits (375), Expect = 9e-37
 Identities = 70/85 (82%), Positives = 77/85 (90%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI  Q
Sbjct: 8   HLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQ 67

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
           R IK+DGKVRTD TYPAGFMDV+S+
Sbjct: 68  RFIKIDGKVRTDITYPAGFMDVISI 92


>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
           S4, X isoform (LOC126235), mRNA; n=1; Takifugu
           rubripes|Rep: similar to 40S ribosomal protein S4, X
           isoform (LOC126235), mRNA - Takifugu rubripes
          Length = 291

 Score =  153 bits (371), Expect = 3e-36
 Identities = 69/85 (81%), Positives = 76/85 (89%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI  Q
Sbjct: 8   HLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQ 67

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
           R IK+DGKVRTD TYP GFMDV+S+
Sbjct: 68  RFIKIDGKVRTDITYPTGFMDVISI 92



 Score =  120 bits (290), Expect(2) = 3e-36
 Identities = 50/76 (65%), Positives = 64/76 (84%)
 Frame = +2

Query: 338 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKF*SGN 517
           +YKLCKVK++  G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF + N
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211

Query: 518 LCMITGGRNLGRVGTI 565
           +CM+TGG NLGR+G I
Sbjct: 212 MCMVTGGANLGRIGVI 227



 Score = 54.0 bits (124), Expect(2) = 3e-36
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAK 340
           I+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 92  IDKTGEHFRLIYDVKGRFTVHRITAEEAK 120


>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
           Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 262

 Score =  150 bits (363), Expect = 3e-35
 Identities = 68/104 (65%), Positives = 82/104 (78%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
           I KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRTIRYPD
Sbjct: 92  IPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPD 151

Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           PLIK ND+I+LD+   KI++FIKF  GN+ M+TGGRN GRVG I
Sbjct: 152 PLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVI 195



 Score =  147 bits (356), Expect = 2e-34
 Identities = 66/85 (77%), Positives = 75/85 (88%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV+ I+ Q
Sbjct: 8   HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQ 67

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
           R I+VDGKVRTD TYPAGFMDVVS+
Sbjct: 68  RHIQVDGKVRTDKTYPAGFMDVVSI 92


>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
           protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
           similar to 40S ribosomal protein S4, X isoform - Canis
           familiaris
          Length = 240

 Score =  149 bits (360), Expect = 6e-35
 Identities = 64/92 (69%), Positives = 77/92 (83%)
 Frame = +2

Query: 290 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 469
           D KGRF +HRITPEEAKYKL KV+++  G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76  DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135

Query: 470 IATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           + T KI DF KF +GNLCM+TGG NLGR+G I
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVI 167



 Score =  116 bits (280), Expect = 3e-25
 Identities = 53/68 (77%), Positives = 58/68 (85%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI  Q
Sbjct: 8   HLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQ 67

Query: 183 RLIKVDGK 206
             IK+DGK
Sbjct: 68  HFIKMDGK 75


>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
           Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
           protein S4 - Entamoeba histolytica HM-1:IMSS
          Length = 326

 Score =  136 bits (330), Expect = 3e-31
 Identities = 60/92 (65%), Positives = 70/92 (76%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HLKRLNAP  WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV  IVK 
Sbjct: 8   HLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKN 67

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRRLMNCF 278
           R IK+DGK+RTD  YP GFMDV+S+ R    F
Sbjct: 68  RTIKIDGKIRTDTRYPVGFMDVLSIPRTKENF 99



 Score =  123 bits (296), Expect = 3e-27
 Identities = 54/104 (51%), Positives = 76/104 (73%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
           I +T E FRL+Y+ K RF +  +T E+AK+KLCK+++   G   +PY+VTHDGRTIRYP 
Sbjct: 92  IPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYPH 151

Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           P ++ ND+I+L++ T KI+DF+KF  GN  M+ GG  +GRVG I
Sbjct: 152 PELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGVI 195


>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
           protein S4, X isoform; n=1; Macaca mulatta|Rep:
           PREDICTED: similar to 40S ribosomal protein S4, X
           isoform - Macaca mulatta
          Length = 244

 Score =  132 bits (319), Expect = 5e-30
 Identities = 61/114 (53%), Positives = 80/114 (70%)
 Frame = +2

Query: 224 LSCWIYGCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 403
           L  WI     I+K  E F LIY +  RF +HRITPEE KYKLCK++++    K +P+LV 
Sbjct: 92  LPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVI 151

Query: 404 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           HD  T+R+PD LIKVND+IQ+D+ T KI   +KF +GNLC++TGG N GR+G I
Sbjct: 152 HDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWGRIGVI 204



 Score =  122 bits (294), Expect = 6e-27
 Identities = 60/88 (68%), Positives = 69/88 (78%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP  IFLRNRLKYALTG+EV KI  Q
Sbjct: 19  HLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQ 77

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRRL 266
             IKVDGK+RTD   P   MDV+S+ ++
Sbjct: 78  WFIKVDGKIRTDNNLPYWIMDVISIDKM 105


>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
           theta|Rep: 40S ribosomal protein S4 - Guillardia theta
           (Cryptomonas phi)
          Length = 257

 Score =  129 bits (312), Expect = 4e-29
 Identities = 57/102 (55%), Positives = 78/102 (76%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
           I+ T E +R++YD  G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTIR+P+
Sbjct: 92  IKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRFPN 151

Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVG 559
            LIK NDSI LD+   K++DFIKF  G+LC++  G N+GR+G
Sbjct: 152 LLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIG 193



 Score =  115 bits (276), Expect = 9e-25
 Identities = 50/86 (58%), Positives = 66/86 (76%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           H KRLNAPK W+L+KLGG++APR S+GPHK +  +PLVI +RN+LKY+    E L I+K+
Sbjct: 8   HYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILKK 67

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLR 260
             I VDGKVR D  +PAG MDV+S++
Sbjct: 68  NEIYVDGKVRADKNFPAGVMDVISIK 93


>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           Ribosomal family S4e containing protein - Tetrahymena
           thermophila SB210
          Length = 370

 Score =  126 bits (304), Expect = 4e-28
 Identities = 55/104 (52%), Positives = 74/104 (71%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
           IEKT++ FR++YD KGRF +  ++ EEAKYKL KV   A GP  +PY+VTHD RTIR+P+
Sbjct: 204 IEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPN 263

Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           P IK+ D+++ D+   KI +F    SGN+C I  G N+GRVG I
Sbjct: 264 PEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGII 307



 Score = 80.6 bits (190), Expect = 2e-14
 Identities = 53/123 (43%), Positives = 66/123 (53%), Gaps = 31/123 (25%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLD-------------------------KLGGVY----APRPSTGPHKL 95
           HLKR+NAPK+WML+                         KL  +Y    A RPS GPHKL
Sbjct: 89  HLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPSQGPHKL 148

Query: 96  RECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGFMDVVSLRRLM 269
           RE LPL + L+ RL YAL G +V  I+  K++ + VDGKVR D  YP G MDVV + +  
Sbjct: 149 RESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKTD 208

Query: 270 NCF 278
             F
Sbjct: 209 QSF 211


>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
           Trichomonas vaginalis G3|Rep: 40S ribosomal protein
           S4-C, putative - Trichomonas vaginalis G3
          Length = 269

 Score =  125 bits (302), Expect = 6e-28
 Identities = 58/92 (63%), Positives = 68/92 (73%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HLKRL AP  W+L K  G +A  PSTGPHKLRECLP+ IFLR+RLKYALT  E + IVK+
Sbjct: 22  HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRRLMNCF 278
           RL+KVDGKVRT+  YP G MDV+ L +    F
Sbjct: 82  RLVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113



 Score =  120 bits (289), Expect = 2e-26
 Identities = 52/102 (50%), Positives = 75/102 (73%)
 Frame = +2

Query: 260 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 439
           K+NELFR+IYD KGRF +H I  +EA +KL +V +   G K +P++VTHDGRTI Y DP 
Sbjct: 108 KSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPS 167

Query: 440 IKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           ++V+D+++ +I T ++   IKF  G++ M+T G N+GRVGTI
Sbjct: 168 VRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGTI 209


>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
           Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
           major
          Length = 273

 Score =  120 bits (288), Expect = 3e-26
 Identities = 55/85 (64%), Positives = 63/85 (74%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HLKRL APK WML KL GV+APRP  GPHKLRECLPL++ +RNRLKYAL   E   I++Q
Sbjct: 5   HLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQ 64

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
            L+ VD   R D  YPAGFMDVV +
Sbjct: 65  GLVHVDNHPRRDGKYPAGFMDVVEI 89



 Score =   99 bits (238), Expect = 4e-20
 Identities = 48/104 (46%), Positives = 63/104 (60%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
           I KT + FRL+YDVKGRF +  ++  EA+ KL KV  + T    VP  VTHDG  IRYPD
Sbjct: 89  IPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRYPD 148

Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           P   + D+I  ++   K +D IK   G   ++TGG N GR+G I
Sbjct: 149 PHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGRIGEI 192


>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
           Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
           Encephalitozoon cuniculi
          Length = 268

 Score = 94.3 bits (224), Expect = 2e-18
 Identities = 42/87 (48%), Positives = 59/87 (67%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HLKR  APK+WMLDK GG +A  P++GPHK  EC+PL   +   L+YA    E+  I+ +
Sbjct: 8   HLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAE 67

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRR 263
           + IKV+G+VRT+  +P G  DVVS+ +
Sbjct: 68  KNIKVNGRVRTNSHFPVGLFDVVSIEK 94



 Score = 78.2 bits (184), Expect = 1e-13
 Identities = 39/104 (37%), Positives = 66/104 (63%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
           IEKT E FR++Y+V  +F +HRI+ EEA Y+L KV +     + +PY+V+  G +IR+ D
Sbjct: 92  IEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSIRFCD 150

Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           P I +  +I++   T+K++++I      +  ++ G+  GRVG I
Sbjct: 151 PAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI 194


>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
           Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
           Methanopyrus kandleri
          Length = 260

 Score = 83.8 bits (198), Expect = 2e-15
 Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 179
           H+KRL AP AW +  K GG +APRP  GPH +   +PL+I +R+ L YA    E  KI+ 
Sbjct: 11  HVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIIT 70

Query: 180 QRLIKVDGKVRTDPTYPAGFMDVVSLRR 263
           +  I VDG VR +P +P G MDVV + R
Sbjct: 71  RGEIYVDGVVRKEPKFPVGIMDVVEIPR 98



 Score = 39.9 bits (89), Expect = 0.040
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT--IRY 427
           I +T + +R++ +   R  +  I+ EEA+ K+C++K           +  HDG+   +  
Sbjct: 96  IPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEI 155

Query: 428 PDP------LIKVNDSIQLDI------ATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
            DP      +  V DS+ L++       + K++D I F  G       GR+ G VG +
Sbjct: 156 EDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVGRV 213


>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
           Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
           aerophilum
          Length = 238

 Score = 81.8 bits (193), Expect = 1e-14
 Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 179
           HL+R  AP  W +  K GGV+  RPS GPH L   LPL + +R+ LKYA T +E   I+ 
Sbjct: 3   HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62

Query: 180 QRLIKVDGKVRTDPTYPAGFMDVVSL 257
           +  +KVDG VR D  +P G MDV+ +
Sbjct: 63  RGYVKVDGVVRRDYKFPVGLMDVIEI 88



 Score = 37.9 bits (84), Expect = 0.16
 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR---TIR 424
           I  T E++R++ D    + +  I+ EEA  KL +V+           L  HDGR   T  
Sbjct: 88  IVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTL 147

Query: 425 YPDPLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
                IK  DS+  D+    I   I    G   ++  G N+G  GT+
Sbjct: 148 EAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194


>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
           maquilingensis IC-167|Rep: Ribosomal protein S4E -
           Caldivirga maquilingensis IC-167
          Length = 237

 Score = 79.0 bits (186), Expect = 7e-14
 Identities = 35/85 (41%), Positives = 51/85 (60%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HL+R  +P+ W +++ G  ++ +PS GPH     +PL + LR+   YA T  E   I+ +
Sbjct: 3   HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
             +KVDGKVR D  YP G MDV+ L
Sbjct: 63  GYVKVDGKVRRDYKYPVGLMDVIEL 87



 Score = 35.9 bits (79), Expect = 0.65
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
 Frame = +2

Query: 266 NELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP--- 436
           NE +R+I D        RI   EA  K+C+++           L  HDGR I        
Sbjct: 91  NEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIVDQDEGR 150

Query: 437 LIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
             +   S+ +++   K+MD+         +   G N+GR GT+
Sbjct: 151 KYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTL 193


>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
           Euryarchaeota|Rep: 30S ribosomal protein S4e -
           Methanococcus maripaludis
          Length = 244

 Score = 77.4 bits (182), Expect = 2e-13
 Identities = 37/85 (43%), Positives = 52/85 (61%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HLKRL AP  W L +    +  RPS GPH + + LPL++ +R+ LKYA    E  KI++ 
Sbjct: 9   HLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQT 68

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
             I +DG  R +  +PAG MDV+S+
Sbjct: 69  GKILIDGLKRKEYKHPAGLMDVLSI 93



 Score = 42.7 bits (96), Expect = 0.006
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRVATGPKNVPYLVTHDGRT--- 418
           I + +E + +++D  GR ++ +   ++   KLCK+  K V  G  N+  L  HDGR    
Sbjct: 93  IPEMDETYLVLFDESGRISLKKT--DKTDVKLCKIVNKTVVKGG-NIQ-LNLHDGRNQIV 148

Query: 419 -----IRYPDPLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
                 +  + + K  DS+ + I    I   + F  G L  ITGG+++G    I
Sbjct: 149 KVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKI 202


>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
           Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
           central - Thermofilum pendens (strain Hrk 5)
          Length = 251

 Score = 72.9 bits (171), Expect = 5e-12
 Identities = 35/85 (41%), Positives = 51/85 (60%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HL+R  AP  W + +   V+  +PS GPH L   +P+ I LR+   YA T  E  +I+  
Sbjct: 11  HLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILAS 70

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
           R+I+VDG+V TD  +P G MDV+ +
Sbjct: 71  RVIEVDGRVVTDYKFPVGLMDVLHI 95



 Score = 47.2 bits (107), Expect = 3e-04
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
 Frame = +2

Query: 275 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI-------RYPD 433
           +R++ D   +     I PEEA YKL +++R  T          HDGR +        Y  
Sbjct: 102 YRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNVLIRKGSEAYST 161

Query: 434 PL-IKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
            +  K  D++ + I    I+  + F  G L ++  GRN+G +G I
Sbjct: 162 AISYKTYDALLITIPRQSIVSHVPFEVGTLAIVVDGRNVGFMGRI 206


>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
           Desulfurococcales|Rep: 30S ribosomal protein S4e -
           Aeropyrum pernix
          Length = 253

 Score = 72.9 bits (171), Expect = 5e-12
 Identities = 34/84 (40%), Positives = 50/84 (59%)
 Frame = +3

Query: 6   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 185
           LK L AP+ W + +    +A +P  GPH   + LPL++ +RN L YA T  E  K++ + 
Sbjct: 10  LKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEG 69

Query: 186 LIKVDGKVRTDPTYPAGFMDVVSL 257
             +VDG VR D  +P GFMDV+ +
Sbjct: 70  HFRVDGVVRKDYKFPVGFMDVIEV 93



 Score = 54.0 bits (124), Expect = 2e-06
 Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
 Frame = +2

Query: 263 TNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI--RYPD 433
           T E FR++ Y VK  F +H I  EE   K  +++   T       L  HDGR I  R  D
Sbjct: 96  TGEKFRMLPYPVKF-FKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKD 154

Query: 434 P------LIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           P      + +  D++ + +   +I   IKF  G + +I GGRN+GRVG +
Sbjct: 155 PRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVV 204


>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
           Euryarchaeota|Rep: 30S ribosomal protein S4E -
           Uncultured methanogenic archaeon RC-I
          Length = 234

 Score = 68.9 bits (161), Expect = 8e-11
 Identities = 32/85 (37%), Positives = 48/85 (56%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HLKR+ AP+ W + +    +  +P  G H     +PLV+ LR+ LK A   +E+ KI+ +
Sbjct: 5   HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
             + VDGKVR D  Y  G  D +S+
Sbjct: 65  GKVLVDGKVRKDYRYTVGMFDTISI 89



 Score = 43.6 bits (98), Expect = 0.003
 Identities = 28/104 (26%), Positives = 48/104 (46%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
           I   N  +R++  + G+F  H +   +A  K+CK+            L  HDG T+   +
Sbjct: 89  IPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTALRGGKIQLNLHDGTTMIASN 146

Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
              K  DS+ L +   KI     +  G+L M+T G++ G +G +
Sbjct: 147 DY-KTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKV 189


>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
           Thermoplasma|Rep: 30S ribosomal protein S4e -
           Thermoplasma acidophilum
          Length = 235

 Score = 67.7 bits (158), Expect = 2e-10
 Identities = 38/105 (36%), Positives = 53/105 (50%)
 Frame = +2

Query: 251 LIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 430
           +IE   E +R++Y+ +G   + + T E A  KL KV+     P N   L THDGRT    
Sbjct: 85  VIEINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITD 144

Query: 431 DPLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           D   KV D   + +   KI + IK   GN   IT G ++ + GTI
Sbjct: 145 DKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTI 189



 Score = 47.6 bits (108), Expect = 2e-04
 Identities = 24/83 (28%), Positives = 42/83 (50%)
 Frame = +3

Query: 9   KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
           KRL   +   + +    + P P+ G H   + + L+  +R+ LK +    E  +I+   L
Sbjct: 6   KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65

Query: 189 IKVDGKVRTDPTYPAGFMDVVSL 257
           +KVDGK   +  +  GFMDV+ +
Sbjct: 66  VKVDGKTVREKKFAVGFMDVIEI 88


>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
           Methanobacteriaceae|Rep: Ribosomal protein S4e -
           Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
           861)
          Length = 242

 Score = 65.3 bits (152), Expect = 9e-10
 Identities = 29/85 (34%), Positives = 44/85 (51%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HLK   APK W +      +  +PS G H +   L L + +R+ LK A    E  +I+  
Sbjct: 9   HLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINS 68

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
             + VDG+V  D  +P GFMD++ +
Sbjct: 69  GNVLVDGRVIKDYKFPVGFMDIIEI 93



 Score = 60.1 bits (139), Expect = 4e-08
 Identities = 33/104 (31%), Positives = 55/104 (52%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
           I KT E++R++ D KGR  +++I  EE   KLCK+   +T       +  HDG+ +   +
Sbjct: 93  IPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDE 150

Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
               V D I L +   +I +  +   G   +ITGG++ G +GT+
Sbjct: 151 NDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGTV 194


>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
           Sulfolobaceae|Rep: 30S ribosomal protein S4e -
           Sulfolobus acidocaldarius
          Length = 244

 Score = 64.1 bits (149), Expect = 2e-09
 Identities = 34/85 (40%), Positives = 45/85 (52%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           H+ R  AP    + K    +  R   GPHK++E +PL I L+  LK   T  E  +I+  
Sbjct: 3   HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
             + VDGKVR D  YP G MDVV +
Sbjct: 63  GKVLVDGKVRRDYKYPVGLMDVVEI 87



 Score = 37.5 bits (83), Expect = 0.21
 Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
 Frame = +2

Query: 278 RLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP-DPLIKVN- 451
           R+I D     T   I+ E+AKYK  ++    T    V  L   DGR I    + L + N 
Sbjct: 95  RIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEELSQYNL 154

Query: 452 ---DSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
               ++++++   KI        G   MI GGRN G  G I
Sbjct: 155 PTLTTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKI 195


>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
           Bigelowiella natans|Rep: 40S ribosomal protein S4 -
           Bigelowiella natans (Pedinomonas minutissima)
           (Chlorarachnion sp.(strain CCMP 621))
          Length = 242

 Score = 63.3 bits (147), Expect = 4e-09
 Identities = 30/100 (30%), Positives = 54/100 (54%)
 Frame = +2

Query: 266 NELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIK 445
           N+ +R++    G+ T++ I   E   K+CKV ++         ++T D R ++     IK
Sbjct: 96  NKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIK 155

Query: 446 VNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           V DS+ +     +I+  +KF  G+LC+IT G++LG +  I
Sbjct: 156 VEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVI 195



 Score = 40.3 bits (90), Expect = 0.030
 Identities = 22/84 (26%), Positives = 39/84 (46%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           H KR+++       K  G++  + S+GPH   + + L+  ++     A    E  K+VK 
Sbjct: 8   HQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKT 67

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVS 254
             + V+GK      +P   MD +S
Sbjct: 68  GFLYVNGKKCLSHKFPISLMDTIS 91


>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
           samples|Rep: Ribosomal protein S4 - uncultured marine
           group II euryarchaeote DeepAnt-JyKC7
          Length = 232

 Score = 62.5 bits (145), Expect = 7e-09
 Identities = 28/85 (32%), Positives = 48/85 (56%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           H+KRL  P++W L +   ++  +P+ G H    C+PL + LR+ L  A    E  +++  
Sbjct: 5   HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
           R + VDG++ TD     G MDV+++
Sbjct: 65  RQVLVDGRIETDLGRGVGLMDVLTV 89



 Score = 44.4 bits (100), Expect = 0.002
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = +2

Query: 275 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD-PLIKVN 451
           FR I DV G+     I+ + A  KLC+V   +T       +  HDGR I   D  L    
Sbjct: 94  FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVSDAKLYDSG 153

Query: 452 DSIQLDIATTKIMDFIKF*SGNLCMITGGRNLG 550
           D++ + +    +     F  G    +TGG ++G
Sbjct: 154 DTLVISLPDQSVAGHHPFSKGATAYLTGGSHIG 186


>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
           Methanococcoides burtonii DSM 6242|Rep: Ribosomal
           protein S4E - Methanococcoides burtonii (strain DSM
           6242)
          Length = 236

 Score = 60.9 bits (141), Expect = 2e-08
 Identities = 25/85 (29%), Positives = 44/85 (51%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           H KR++ PK+W + K    +      GPH   + +PL + LR+ L       E  +++ +
Sbjct: 4   HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
             + VDG  R D  +P G MD++++
Sbjct: 64  GNVLVDGVARKDLRFPVGLMDIITI 88



 Score = 46.4 bits (105), Expect = 5e-04
 Identities = 31/104 (29%), Positives = 52/104 (50%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
           I   N  +R++ D K R  ++++    A  KLC+++   +  +    +  +DG  I   +
Sbjct: 88  IPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIEGKTSIKEGKIQMRLNDGVNIIGSN 146

Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
                 DSI L +   K++  IK+  GNL MI GG + G VG+I
Sbjct: 147 NY-NTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGSHAGEVGSI 189


>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
           Euryarchaeota|Rep: 30S ribosomal protein S4e -
           Methanosarcina mazei (Methanosarcina frisia)
          Length = 235

 Score = 60.9 bits (141), Expect = 2e-08
 Identities = 29/85 (34%), Positives = 44/85 (51%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           H KRL+ PK+W + + G  +      GPH     LPL + +R+ LK      E  +I+ +
Sbjct: 3   HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
             + VDG  R D  +P G  DV++L
Sbjct: 63  GKVLVDGISRKDLRFPVGLFDVITL 87



 Score = 51.6 bits (118), Expect = 1e-05
 Identities = 30/100 (30%), Positives = 48/100 (48%)
 Frame = +2

Query: 266 NELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIK 445
           NE +R++ D KGR  ++++       KLC++    T       L  +DG  I   +    
Sbjct: 91  NEAYRMLQDEKGRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNILGSNDY-G 148

Query: 446 VNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
             DS+ L I    ++  +KF  GNL M+ GG++ G  G I
Sbjct: 149 TKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKI 188


>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
           n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
           protein Faci_03001139 - Ferroplasma acidarmanus fer1
          Length = 241

 Score = 57.6 bits (133), Expect = 2e-07
 Identities = 26/91 (28%), Positives = 50/91 (54%)
 Frame = +3

Query: 9   KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
           K + A +   + +    ++  P+   H   + +P++I LR+ LK      E+ +I+   +
Sbjct: 7   KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66

Query: 189 IKVDGKVRTDPTYPAGFMDVVSLRRLMNCFV 281
           +KVDG++  D  +P GFMDV+S+  L N ++
Sbjct: 67  VKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97



 Score = 48.8 bits (111), Expect = 9e-05
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
 Frame = +2

Query: 281 LIYDVKGRFTIHRITPEEAKYKLCKV-KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 457
           ++YD KG+  I +  P     KL KV K+   G   +  L  HDG+TI      I  +D 
Sbjct: 98  IVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKIQ-LGFHDGKTIVTDRKDINTSDV 156

Query: 458 IQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           + + I   +I + +K   G+   ITGG ++G + TI
Sbjct: 157 LLMKIPDLEIENVLKIAEGDKVFITGGSHVGELATI 192


>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
           Methanocorpusculum labreanum Z|Rep: Ribosomal protein
           S4E, central - Methanocorpusculum labreanum (strain ATCC
           43576 / DSM 4855 / Z)
          Length = 239

 Score = 57.2 bits (132), Expect = 2e-07
 Identities = 28/86 (32%), Positives = 47/86 (54%)
 Frame = +3

Query: 9   KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
           KR+ AP AW + +    Y    S+GPH     LP+ I+LR+ +++AL   EV KI+  R 
Sbjct: 5   KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63

Query: 189 IKVDGKVRTDPTYPAGFMDVVSLRRL 266
           + ++G + TD        D++S  ++
Sbjct: 64  VLLNGHIVTDEHIGIDVFDIISFPKI 89


>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
           Methanomicrobiales|Rep: Ribosomal protein S4E, central -
           Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
           / JR1)
          Length = 242

 Score = 54.8 bits (126), Expect = 1e-06
 Identities = 30/88 (34%), Positives = 48/88 (54%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           +LKRL AP +W + K    +  + + GPH     LP+ ++LR  +  A   +EV KI+ Q
Sbjct: 4   YLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILHQ 62

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRRL 266
           R + V+G+   D     G  D+VS+ +L
Sbjct: 63  RDVLVNGRACKDSRMGLGVFDIVSIPKL 90



 Score = 52.4 bits (120), Expect = 7e-06
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
 Frame = +2

Query: 236 IYGCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 415
           ++    I K  + +R+  DVKG      I  E AK +LCK++   T       L    G 
Sbjct: 81  VFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGA 140

Query: 416 TIRYPDPLIKVNDSIQLDIATT-----KIMDFIKF*SGNLCMITGGRNLGRVGTI 565
            +   D   K  DS+ + + T      +I+D   +  GN+ MI GG++ G+VG I
Sbjct: 141 NV-LADNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVAMIVGGKHSGKVGRI 194


>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
           Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
           Nanoarchaeum equitans
          Length = 234

 Score = 54.8 bits (126), Expect = 1e-06
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 179
           HL+ L  P+ W +  K  G +  +PS GPH     +P+ ++LR+ L  A    EV  ++ 
Sbjct: 8   HLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLN 67

Query: 180 QRLIKVDGKVRTDPTYPAGFMDVVSL 257
              + VDG+   D  +P G  DV+++
Sbjct: 68  NGKVLVDGRPIKDYKFPVGLFDVLAI 93


>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
           Halobacteriaceae|Rep: 30S ribosomal protein S4E -
           Haloarcula marismortui (Halobacterium marismortui)
          Length = 234

 Score = 50.0 bits (114), Expect = 4e-05
 Identities = 24/84 (28%), Positives = 43/84 (51%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           H KRL+ P +W +++    +  +   GPH     +PL+I LR+ L YA    E    + +
Sbjct: 4   HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVS 254
             + ++GK  +D   P G  D+++
Sbjct: 63  DNVLINGKAISDEERPVGMFDILA 86


>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
           Picrophilus torridus|Rep: 30S ribosomal protein S4e -
           Picrophilus torridus
          Length = 234

 Score = 49.2 bits (112), Expect = 7e-05
 Identities = 32/93 (34%), Positives = 44/93 (47%)
 Frame = +2

Query: 287 YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQL 466
           YD KG+  I     E    KL +VK           +  HDG T+      IK  DS+ +
Sbjct: 97  YDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLV 156

Query: 467 DIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
            I   +I+D +KF  GN   ITGG ++G + TI
Sbjct: 157 KIPKKEIVDVLKFAPGNRVFITGGSHVGEIATI 189



 Score = 46.4 bits (105), Expect = 5e-04
 Identities = 26/83 (31%), Positives = 42/83 (50%)
 Frame = +3

Query: 9   KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
           K + AP+   + +    +A     G HK    +PL+I LR+ LK      E+ +I+   L
Sbjct: 6   KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65

Query: 189 IKVDGKVRTDPTYPAGFMDVVSL 257
           + VDGKV  +     GFMD +++
Sbjct: 66  VMVDGKVVKERRRGIGFMDTLTV 88


>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
           Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
           symbiosum
          Length = 238

 Score = 46.0 bits (104), Expect = 6e-04
 Identities = 27/84 (32%), Positives = 37/84 (44%)
 Frame = +3

Query: 6   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 185
           LKR  AP  W + + G  +      G H     +P  + LR+ L    T  E  K +   
Sbjct: 10  LKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIYSG 69

Query: 186 LIKVDGKVRTDPTYPAGFMDVVSL 257
            ++VDG  RT   +  G MDVV L
Sbjct: 70  NVEVDGVKRTSLHHGIGLMDVVEL 93


>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
           Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
           sequence - Ostreococcus tauri
          Length = 197

 Score = 43.2 bits (97), Expect = 0.004
 Identities = 29/97 (29%), Positives = 48/97 (49%)
 Frame = -1

Query: 544 VTASRDHTQVPRSKLDEVHNLRSCNV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRH 365
           V  + DH Q    +LD + +L   +V  +G+   D  + V +GAA+++   R+ L     
Sbjct: 93  VVTTGDHAQSADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELL 152

Query: 364 TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISLLN 254
                QLVL     D V  ES+L ++D  + FI+L +
Sbjct: 153 APHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIALFD 189


>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
           n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
           protein Faci_03000514 - Ferroplasma acidarmanus fer1
          Length = 317

 Score = 33.9 bits (74), Expect = 2.6
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -3

Query: 251 DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALAQLV 87
           +NI +   I  +  N P    E LFH F DFVSG  ++  I +  +  + +AQ +
Sbjct: 58  ENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIAQFI 112


>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
           Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
           synthetase - Mimivirus
          Length = 509

 Score = 32.7 bits (71), Expect = 6.1
 Identities = 14/54 (25%), Positives = 32/54 (59%)
 Frame = +3

Query: 36  MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 197
           +LDKLG +Y    S+  HK+++ + ++I  R++L+      ++   +K++L  +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474


>UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to
           Tyrosine-protein phosphatase non-receptor type 13
           (Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
           (PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
           (Fas-associated protein-tyrosine phosphatase 1) (FAP-1);
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           Tyrosine-protein phosphatase non-receptor type 13
           (Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
           (PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
           (Fas-associated protein-tyrosine phosphatase 1) (FAP-1)
           - Tribolium castaneum
          Length = 768

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +2

Query: 395 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKF*SGNLCMI 529
           +   DGR ++  D +IKVND     ++TT+I+D ++   G +C++
Sbjct: 708 VAARDGR-LKPGDRVIKVNDESVEHLSTTEIIDLLRIVRGPVCIV 751


>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
           tuberculosis complex|Rep: PROBABLE OXIDASE -
           Mycobacterium bovis
          Length = 504

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -2

Query: 114 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASN 4
           PG   RAT GD + VSV T+R   PTS+ W  ++  N
Sbjct: 93  PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRN 128


>UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
           Sensor protein - Pseudomonas mendocina ymp
          Length = 783

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -1

Query: 463 LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLR 326
           L+ I+ F + + +  G    + QVR+ILR+GRH L     VL + R
Sbjct: 420 LNSILGFAQLLEMDRGTPAQQAQVRHILRAGRHLLGLINEVLDIAR 465


>UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative;
           n=2; Trichomonas vaginalis G3|Rep: Ser/Thr protein
           phosphatase, putative - Trichomonas vaginalis G3
          Length = 475

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = -1

Query: 472 NV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALN 293
           NV  + I +  +WV    G    RY+ R   R+  H   +   + +LL  D VDCE+ LN
Sbjct: 400 NVTRETINNAAEWVRTT-GEGQWRYRERIYTRADEHNAFYYCALKALLPDDIVDCENKLN 458

Query: 292 I 290
           I
Sbjct: 459 I 459


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,349,146
Number of Sequences: 1657284
Number of extensions: 13189245
Number of successful extensions: 36931
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 35645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36918
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37904934977
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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