Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0975.Seq
(565 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 178 8e-44
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 174 1e-42
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 153 3e-36
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 150 3e-35
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 149 6e-35
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 136 3e-31
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 132 5e-30
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 129 4e-29
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 126 4e-28
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 125 6e-28
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 120 3e-26
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 94 2e-18
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 84 2e-15
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 82 1e-14
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 79 7e-14
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 77 2e-13
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 73 5e-12
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 73 5e-12
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 69 8e-11
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 68 2e-10
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 65 9e-10
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 64 2e-09
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 63 4e-09
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 62 7e-09
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 61 2e-08
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 61 2e-08
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 58 2e-07
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 57 2e-07
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 55 1e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 55 1e-06
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 50 4e-05
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 49 7e-05
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 46 6e-04
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 43 0.004
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 34 2.6
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 6.1
UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to Tyrosine-p... 32 8.1
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 32 8.1
UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 32 8.1
UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative; ... 32 8.1
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 178 bits (433), Expect = 8e-44
Identities = 80/104 (76%), Positives = 90/104 (86%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
+EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRYPD
Sbjct: 92 LEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPD 151
Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
PLI NDS+Q+DIA+ KI D+IKF SGNLCMITGGRNLGRVGT+
Sbjct: 152 PLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTV 195
Score = 161 bits (390), Expect = 1e-38
Identities = 73/87 (83%), Positives = 80/87 (91%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV Q
Sbjct: 8 HLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQ 67
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRR 263
RL+KVDGKVRTDPTYPAG+MDV++L +
Sbjct: 68 RLVKVDGKVRTDPTYPAGYMDVITLEK 94
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 174 bits (423), Expect = 1e-42
Identities = 76/104 (73%), Positives = 89/104 (85%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
I+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RTIRYPD
Sbjct: 92 IDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPD 151
Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
PLIKVND+IQ+D+ T KI DFIKF +GNLCM+TGG NLGR+G I
Sbjct: 152 PLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVI 195
Score = 155 bits (375), Expect = 9e-37
Identities = 70/85 (82%), Positives = 77/85 (90%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q
Sbjct: 8 HLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQ 67
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
R IK+DGKVRTD TYPAGFMDV+S+
Sbjct: 68 RFIKIDGKVRTDITYPAGFMDVISI 92
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 153 bits (371), Expect = 3e-36
Identities = 69/85 (81%), Positives = 76/85 (89%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q
Sbjct: 8 HLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQ 67
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
R IK+DGKVRTD TYP GFMDV+S+
Sbjct: 68 RFIKIDGKVRTDITYPTGFMDVISI 92
Score = 120 bits (290), Expect(2) = 3e-36
Identities = 50/76 (65%), Positives = 64/76 (84%)
Frame = +2
Query: 338 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKF*SGN 517
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF + N
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 518 LCMITGGRNLGRVGTI 565
+CM+TGG NLGR+G I
Sbjct: 212 MCMVTGGANLGRIGVI 227
Score = 54.0 bits (124), Expect(2) = 3e-36
Identities = 24/29 (82%), Positives = 26/29 (89%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAK 340
I+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 92 IDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 150 bits (363), Expect = 3e-35
Identities = 68/104 (65%), Positives = 82/104 (78%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
I KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPD
Sbjct: 92 IPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPD 151
Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
PLIK ND+I+LD+ KI++FIKF GN+ M+TGGRN GRVG I
Sbjct: 152 PLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVI 195
Score = 147 bits (356), Expect = 2e-34
Identities = 66/85 (77%), Positives = 75/85 (88%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ Q
Sbjct: 8 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQ 67
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
R I+VDGKVRTD TYPAGFMDVVS+
Sbjct: 68 RHIQVDGKVRTDKTYPAGFMDVVSI 92
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 149 bits (360), Expect = 6e-35
Identities = 64/92 (69%), Positives = 77/92 (83%)
Frame = +2
Query: 290 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 469
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 470 IATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
+ T KI DF KF +GNLCM+TGG NLGR+G I
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVI 167
Score = 116 bits (280), Expect = 3e-25
Identities = 53/68 (77%), Positives = 58/68 (85%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q
Sbjct: 8 HLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQ 67
Query: 183 RLIKVDGK 206
IK+DGK
Sbjct: 68 HFIKMDGK 75
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 136 bits (330), Expect = 3e-31
Identities = 60/92 (65%), Positives = 70/92 (76%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV IVK
Sbjct: 8 HLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKN 67
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRRLMNCF 278
R IK+DGK+RTD YP GFMDV+S+ R F
Sbjct: 68 RTIKIDGKIRTDTRYPVGFMDVLSIPRTKENF 99
Score = 123 bits (296), Expect = 3e-27
Identities = 54/104 (51%), Positives = 76/104 (73%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
I +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRTIRYP
Sbjct: 92 IPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYPH 151
Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
P ++ ND+I+L++ T KI+DF+KF GN M+ GG +GRVG I
Sbjct: 152 PELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGVI 195
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 132 bits (319), Expect = 5e-30
Identities = 61/114 (53%), Positives = 80/114 (70%)
Frame = +2
Query: 224 LSCWIYGCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 403
L WI I+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV
Sbjct: 92 LPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVI 151
Query: 404 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
HD T+R+PD LIKVND+IQ+D+ T KI +KF +GNLC++TGG N GR+G I
Sbjct: 152 HDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWGRIGVI 204
Score = 122 bits (294), Expect = 6e-27
Identities = 60/88 (68%), Positives = 69/88 (78%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI Q
Sbjct: 19 HLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQ 77
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRRL 266
IKVDGK+RTD P MDV+S+ ++
Sbjct: 78 WFIKVDGKIRTDNNLPYWIMDVISIDKM 105
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 129 bits (312), Expect = 4e-29
Identities = 57/102 (55%), Positives = 78/102 (76%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
I+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTIR+P+
Sbjct: 92 IKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRFPN 151
Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVG 559
LIK NDSI LD+ K++DFIKF G+LC++ G N+GR+G
Sbjct: 152 LLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIG 193
Score = 115 bits (276), Expect = 9e-25
Identities = 50/86 (58%), Positives = 66/86 (76%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
H KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I+K+
Sbjct: 8 HYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILKK 67
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLR 260
I VDGKVR D +PAG MDV+S++
Sbjct: 68 NEIYVDGKVRADKNFPAGVMDVISIK 93
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 126 bits (304), Expect = 4e-28
Identities = 55/104 (52%), Positives = 74/104 (71%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR+P+
Sbjct: 204 IEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPN 263
Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
P IK+ D+++ D+ KI +F SGN+C I G N+GRVG I
Sbjct: 264 PEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGII 307
Score = 80.6 bits (190), Expect = 2e-14
Identities = 53/123 (43%), Positives = 66/123 (53%), Gaps = 31/123 (25%)
Frame = +3
Query: 3 HLKRLNAPKAWMLD-------------------------KLGGVY----APRPSTGPHKL 95
HLKR+NAPK+WML+ KL +Y A RPS GPHKL
Sbjct: 89 HLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPSQGPHKL 148
Query: 96 RECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGFMDVVSLRRLM 269
RE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G MDVV + +
Sbjct: 149 RESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKTD 208
Query: 270 NCF 278
F
Sbjct: 209 QSF 211
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 125 bits (302), Expect = 6e-28
Identities = 58/92 (63%), Positives = 68/92 (73%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+
Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRRLMNCF 278
RL+KVDGKVRT+ YP G MDV+ L + F
Sbjct: 82 RLVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113
Score = 120 bits (289), Expect = 2e-26
Identities = 52/102 (50%), Positives = 75/102 (73%)
Frame = +2
Query: 260 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 439
K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGRTI Y DP
Sbjct: 108 KSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPS 167
Query: 440 IKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
++V+D+++ +I T ++ IKF G++ M+T G N+GRVGTI
Sbjct: 168 VRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGTI 209
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 120 bits (288), Expect = 3e-26
Identities = 55/85 (64%), Positives = 63/85 (74%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I++Q
Sbjct: 5 HLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQ 64
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
L+ VD R D YPAGFMDVV +
Sbjct: 65 GLVHVDNHPRRDGKYPAGFMDVVEI 89
Score = 99 bits (238), Expect = 4e-20
Identities = 48/104 (46%), Positives = 63/104 (60%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG IRYPD
Sbjct: 89 IPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRYPD 148
Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
P + D+I ++ K +D IK G ++TGG N GR+G I
Sbjct: 149 PHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGRIGEI 192
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 94.3 bits (224), Expect = 2e-18
Identities = 42/87 (48%), Positives = 59/87 (67%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+ I+ +
Sbjct: 8 HLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAE 67
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRR 263
+ IKV+G+VRT+ +P G DVVS+ +
Sbjct: 68 KNIKVNGRVRTNSHFPVGLFDVVSIEK 94
Score = 78.2 bits (184), Expect = 1e-13
Identities = 39/104 (37%), Positives = 66/104 (63%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
IEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G +IR+ D
Sbjct: 92 IEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSIRFCD 150
Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
P I + +I++ T+K++++I + ++ G+ GRVG I
Sbjct: 151 PAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI 194
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 83.8 bits (198), Expect = 2e-15
Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = +3
Query: 3 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 179
H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E KI+
Sbjct: 11 HVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIIT 70
Query: 180 QRLIKVDGKVRTDPTYPAGFMDVVSLRR 263
+ I VDG VR +P +P G MDVV + R
Sbjct: 71 RGEIYVDGVVRKEPKFPVGIMDVVEIPR 98
Score = 39.9 bits (89), Expect = 0.040
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT--IRY 427
I +T + +R++ + R + I+ EEA+ K+C++K + HDG+ +
Sbjct: 96 IPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEI 155
Query: 428 PDP------LIKVNDSIQLDI------ATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
DP + V DS+ L++ + K++D I F G GR+ G VG +
Sbjct: 156 EDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVGRV 213
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 81.8 bits (193), Expect = 1e-14
Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 179
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 180 QRLIKVDGKVRTDPTYPAGFMDVVSL 257
+ +KVDG VR D +P G MDV+ +
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEI 88
Score = 37.9 bits (84), Expect = 0.16
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR---TIR 424
I T E++R++ D + + I+ EEA KL +V+ L HDGR T
Sbjct: 88 IVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTL 147
Query: 425 YPDPLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
IK DS+ D+ I I G ++ G N+G GT+
Sbjct: 148 EAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 79.0 bits (186), Expect = 7e-14
Identities = 35/85 (41%), Positives = 51/85 (60%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
+KVDGKVR D YP G MDV+ L
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIEL 87
Score = 35.9 bits (79), Expect = 0.65
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Frame = +2
Query: 266 NELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP--- 436
NE +R+I D RI EA K+C+++ L HDGR I
Sbjct: 91 NEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIVDQDEGR 150
Query: 437 LIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
+ S+ +++ K+MD+ + G N+GR GT+
Sbjct: 151 KYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTL 193
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 77.4 bits (182), Expect = 2e-13
Identities = 37/85 (43%), Positives = 52/85 (61%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E KI++
Sbjct: 9 HLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQT 68
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
I +DG R + +PAG MDV+S+
Sbjct: 69 GKILIDGLKRKEYKHPAGLMDVLSI 93
Score = 42.7 bits (96), Expect = 0.006
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRVATGPKNVPYLVTHDGRT--- 418
I + +E + +++D GR ++ + ++ KLCK+ K V G N+ L HDGR
Sbjct: 93 IPEMDETYLVLFDESGRISLKKT--DKTDVKLCKIVNKTVVKGG-NIQ-LNLHDGRNQIV 148
Query: 419 -----IRYPDPLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
+ + + K DS+ + I I + F G L ITGG+++G I
Sbjct: 149 KVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKI 202
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 72.9 bits (171), Expect = 5e-12
Identities = 35/85 (41%), Positives = 51/85 (60%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E +I+
Sbjct: 11 HLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILAS 70
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
R+I+VDG+V TD +P G MDV+ +
Sbjct: 71 RVIEVDGRVVTDYKFPVGLMDVLHI 95
Score = 47.2 bits (107), Expect = 3e-04
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Frame = +2
Query: 275 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI-------RYPD 433
+R++ D + I PEEA YKL +++R T HDGR + Y
Sbjct: 102 YRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNVLIRKGSEAYST 161
Query: 434 PL-IKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
+ K D++ + I I+ + F G L ++ GRN+G +G I
Sbjct: 162 AISYKTYDALLITIPRQSIVSHVPFEVGTLAIVVDGRNVGFMGRI 206
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 72.9 bits (171), Expect = 5e-12
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = +3
Query: 6 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 185
LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K++ +
Sbjct: 10 LKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEG 69
Query: 186 LIKVDGKVRTDPTYPAGFMDVVSL 257
+VDG VR D +P GFMDV+ +
Sbjct: 70 HFRVDGVVRKDYKFPVGFMDVIEV 93
Score = 54.0 bits (124), Expect = 2e-06
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Frame = +2
Query: 263 TNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI--RYPD 433
T E FR++ Y VK F +H I EE K +++ T L HDGR I R D
Sbjct: 96 TGEKFRMLPYPVKF-FKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKD 154
Query: 434 P------LIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
P + + D++ + + +I IKF G + +I GGRN+GRVG +
Sbjct: 155 PRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVV 204
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 68.9 bits (161), Expect = 8e-11
Identities = 32/85 (37%), Positives = 48/85 (56%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
+ VDGKVR D Y G D +S+
Sbjct: 65 GKVLVDGKVRKDYRYTVGMFDTISI 89
Score = 43.6 bits (98), Expect = 0.003
Identities = 28/104 (26%), Positives = 48/104 (46%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
I N +R++ + G+F H + +A K+CK+ L HDG T+ +
Sbjct: 89 IPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTALRGGKIQLNLHDGTTMIASN 146
Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
K DS+ L + KI + G+L M+T G++ G +G +
Sbjct: 147 DY-KTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKV 189
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 67.7 bits (158), Expect = 2e-10
Identities = 38/105 (36%), Positives = 53/105 (50%)
Frame = +2
Query: 251 LIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 430
+IE E +R++Y+ +G + + T E A KL KV+ P N L THDGRT
Sbjct: 85 VIEINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITD 144
Query: 431 DPLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
D KV D + + KI + IK GN IT G ++ + GTI
Sbjct: 145 DKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTI 189
Score = 47.6 bits (108), Expect = 2e-04
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 189 IKVDGKVRTDPTYPAGFMDVVSL 257
+KVDGK + + GFMDV+ +
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEI 88
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 65.3 bits (152), Expect = 9e-10
Identities = 29/85 (34%), Positives = 44/85 (51%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLK APK W + + +PS G H + L L + +R+ LK A E +I+
Sbjct: 9 HLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINS 68
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
+ VDG+V D +P GFMD++ +
Sbjct: 69 GNVLVDGRVIKDYKFPVGFMDIIEI 93
Score = 60.1 bits (139), Expect = 4e-08
Identities = 33/104 (31%), Positives = 55/104 (52%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
I KT E++R++ D KGR +++I EE KLCK+ +T + HDG+ + +
Sbjct: 93 IPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDE 150
Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
V D I L + +I + + G +ITGG++ G +GT+
Sbjct: 151 NDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGTV 194
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 64.1 bits (149), Expect = 2e-09
Identities = 34/85 (40%), Positives = 45/85 (52%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
+ VDGKVR D YP G MDVV +
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEI 87
Score = 37.5 bits (83), Expect = 0.21
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Frame = +2
Query: 278 RLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP-DPLIKVN- 451
R+I D T I+ E+AKYK ++ T V L DGR I + L + N
Sbjct: 95 RIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEELSQYNL 154
Query: 452 ---DSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
++++++ KI G MI GGRN G G I
Sbjct: 155 PTLTTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKI 195
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 63.3 bits (147), Expect = 4e-09
Identities = 30/100 (30%), Positives = 54/100 (54%)
Frame = +2
Query: 266 NELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIK 445
N+ +R++ G+ T++ I E K+CKV ++ ++T D R ++ IK
Sbjct: 96 NKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIK 155
Query: 446 VNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
V DS+ + +I+ +KF G+LC+IT G++LG + I
Sbjct: 156 VEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVI 195
Score = 40.3 bits (90), Expect = 0.030
Identities = 22/84 (26%), Positives = 39/84 (46%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
H KR+++ K G++ + S+GPH + + L+ ++ A E K+VK
Sbjct: 8 HQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKT 67
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVS 254
+ V+GK +P MD +S
Sbjct: 68 GFLYVNGKKCLSHKFPISLMDTIS 91
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 62.5 bits (145), Expect = 7e-09
Identities = 28/85 (32%), Positives = 48/85 (56%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
R + VDG++ TD G MDV+++
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDVLTV 89
Score = 44.4 bits (100), Expect = 0.002
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +2
Query: 275 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD-PLIKVN 451
FR I DV G+ I+ + A KLC+V +T + HDGR I D L
Sbjct: 94 FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVSDAKLYDSG 153
Query: 452 DSIQLDIATTKIMDFIKF*SGNLCMITGGRNLG 550
D++ + + + F G +TGG ++G
Sbjct: 154 DTLVISLPDQSVAGHHPFSKGATAYLTGGSHIG 186
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 60.9 bits (141), Expect = 2e-08
Identities = 25/85 (29%), Positives = 44/85 (51%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
+ VDG R D +P G MD++++
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDIITI 88
Score = 46.4 bits (105), Expect = 5e-04
Identities = 31/104 (29%), Positives = 52/104 (50%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
I N +R++ D K R ++++ A KLC+++ + + + +DG I +
Sbjct: 88 IPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIEGKTSIKEGKIQMRLNDGVNIIGSN 146
Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
DSI L + K++ IK+ GNL MI GG + G VG+I
Sbjct: 147 NY-NTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGSHAGEVGSI 189
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 60.9 bits (141), Expect = 2e-08
Identities = 29/85 (34%), Positives = 44/85 (51%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
+ VDG R D +P G DV++L
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITL 87
Score = 51.6 bits (118), Expect = 1e-05
Identities = 30/100 (30%), Positives = 48/100 (48%)
Frame = +2
Query: 266 NELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIK 445
NE +R++ D KGR ++++ KLC++ T L +DG I +
Sbjct: 91 NEAYRMLQDEKGRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNILGSNDY-G 148
Query: 446 VNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
DS+ L I ++ +KF GNL M+ GG++ G G I
Sbjct: 149 TKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKI 188
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 57.6 bits (133), Expect = 2e-07
Identities = 26/91 (28%), Positives = 50/91 (54%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 189 IKVDGKVRTDPTYPAGFMDVVSLRRLMNCFV 281
+KVDG++ D +P GFMDV+S+ L N ++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97
Score = 48.8 bits (111), Expect = 9e-05
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +2
Query: 281 LIYDVKGRFTIHRITPEEAKYKLCKV-KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 457
++YD KG+ I + P KL KV K+ G + L HDG+TI I +D
Sbjct: 98 IVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKIQ-LGFHDGKTIVTDRKDINTSDV 156
Query: 458 IQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
+ + I +I + +K G+ ITGG ++G + TI
Sbjct: 157 LLMKIPDLEIENVLKIAEGDKVFITGGSHVGELATI 192
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 57.2 bits (132), Expect = 2e-07
Identities = 28/86 (32%), Positives = 47/86 (54%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 189 IKVDGKVRTDPTYPAGFMDVVSLRRL 266
+ ++G + TD D++S ++
Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKI 89
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 54.8 bits (126), Expect = 1e-06
Identities = 30/88 (34%), Positives = 48/88 (54%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+ Q
Sbjct: 4 YLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILHQ 62
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRRL 266
R + V+G+ D G D+VS+ +L
Sbjct: 63 RDVLVNGRACKDSRMGLGVFDIVSIPKL 90
Score = 52.4 bits (120), Expect = 7e-06
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Frame = +2
Query: 236 IYGCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 415
++ I K + +R+ DVKG I E AK +LCK++ T L G
Sbjct: 81 VFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGA 140
Query: 416 TIRYPDPLIKVNDSIQLDIATT-----KIMDFIKF*SGNLCMITGGRNLGRVGTI 565
+ D K DS+ + + T +I+D + GN+ MI GG++ G+VG I
Sbjct: 141 NV-LADNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVAMIVGGKHSGKVGRI 194
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 54.8 bits (126), Expect = 1e-06
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 179
HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV ++
Sbjct: 8 HLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLN 67
Query: 180 QRLIKVDGKVRTDPTYPAGFMDVVSL 257
+ VDG+ D +P G DV+++
Sbjct: 68 NGKVLVDGRPIKDYKFPVGLFDVLAI 93
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 50.0 bits (114), Expect = 4e-05
Identities = 24/84 (28%), Positives = 43/84 (51%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVS 254
+ ++GK +D P G D+++
Sbjct: 63 DNVLINGKAISDEERPVGMFDILA 86
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 49.2 bits (112), Expect = 7e-05
Identities = 32/93 (34%), Positives = 44/93 (47%)
Frame = +2
Query: 287 YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQL 466
YD KG+ I E KL +VK + HDG T+ IK DS+ +
Sbjct: 97 YDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLV 156
Query: 467 DIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
I +I+D +KF GN ITGG ++G + TI
Sbjct: 157 KIPKKEIVDVLKFAPGNRVFITGGSHVGEIATI 189
Score = 46.4 bits (105), Expect = 5e-04
Identities = 26/83 (31%), Positives = 42/83 (50%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 189 IKVDGKVRTDPTYPAGFMDVVSL 257
+ VDGKV + GFMD +++
Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTV 88
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 46.0 bits (104), Expect = 6e-04
Identities = 27/84 (32%), Positives = 37/84 (44%)
Frame = +3
Query: 6 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 185
LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 10 LKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIYSG 69
Query: 186 LIKVDGKVRTDPTYPAGFMDVVSL 257
++VDG RT + G MDVV L
Sbjct: 70 NVEVDGVKRTSLHHGIGLMDVVEL 93
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 43.2 bits (97), Expect = 0.004
Identities = 29/97 (29%), Positives = 48/97 (49%)
Frame = -1
Query: 544 VTASRDHTQVPRSKLDEVHNLRSCNV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRH 365
V + DH Q +LD + +L +V +G+ D + V +GAA+++ R+ L
Sbjct: 93 VVTTGDHAQSADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELL 152
Query: 364 TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISLLN 254
QLVL D V ES+L ++D + FI+L +
Sbjct: 153 APHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIALFD 189
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 33.9 bits (74), Expect = 2.6
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -3
Query: 251 DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALAQLV 87
+NI + I + N P E LFH F DFVSG ++ I + + + +AQ +
Sbjct: 58 ENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIAQFI 112
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 6.1
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +3
Query: 36 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 197
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
>UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1);
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1)
- Tribolium castaneum
Length = 768
Score = 32.3 bits (70), Expect = 8.1
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +2
Query: 395 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKF*SGNLCMI 529
+ DGR ++ D +IKVND ++TT+I+D ++ G +C++
Sbjct: 708 VAARDGR-LKPGDRVIKVNDESVEHLSTTEIIDLLRIVRGPVCIV 751
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 32.3 bits (70), Expect = 8.1
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -2
Query: 114 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASN 4
PG RAT GD + VSV T+R PTS+ W ++ N
Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRN 128
>UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas mendocina ymp
Length = 783
Score = 32.3 bits (70), Expect = 8.1
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 463 LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLR 326
L+ I+ F + + + G + QVR+ILR+GRH L VL + R
Sbjct: 420 LNSILGFAQLLEMDRGTPAQQAQVRHILRAGRHLLGLINEVLDIAR 465
>UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative;
n=2; Trichomonas vaginalis G3|Rep: Ser/Thr protein
phosphatase, putative - Trichomonas vaginalis G3
Length = 475
Score = 32.3 bits (70), Expect = 8.1
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = -1
Query: 472 NV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALN 293
NV + I + +WV G RY+ R R+ H + + +LL D VDCE+ LN
Sbjct: 400 NVTRETINNAAEWVRTT-GEGQWRYRERIYTRADEHNAFYYCALKALLPDDIVDCENKLN 458
Query: 292 I 290
I
Sbjct: 459 I 459
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,349,146
Number of Sequences: 1657284
Number of extensions: 13189245
Number of successful extensions: 36931
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 35645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36918
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37904934977
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -