Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0975.Seq
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   167   7e-43
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   167   7e-43
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   166   2e-42
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   1.4  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   2.5  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   3.3  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    26   3.3  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   5.8  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   5.8  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   5.8  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    25   5.8  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   7.7  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   7.7  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  167 bits (407), Expect = 7e-43
 Identities = 76/104 (73%), Positives = 88/104 (84%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
           +EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTHDGRTIRYPD
Sbjct: 92  VEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPD 151

Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           PLIKVND+I+L++ T KI  FIKF +    M+TGGRN+GRVGTI
Sbjct: 152 PLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTI 195



 Score =  142 bits (343), Expect = 4e-35
 Identities = 62/87 (71%), Positives = 72/87 (82%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV  I+ Q
Sbjct: 8   HLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQ 67

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRR 263
           RLIKVDGKVRTD T+P GFMDV+S+ +
Sbjct: 68  RLIKVDGKVRTDSTFPTGFMDVISVEK 94


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  167 bits (407), Expect = 7e-43
 Identities = 76/104 (73%), Positives = 88/104 (84%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
           +EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTHDGRTIRYPD
Sbjct: 92  VEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPD 151

Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           PLIKVND+I+L++ T KI  FIKF +    M+TGGRN+GRVGTI
Sbjct: 152 PLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTI 195



 Score =  140 bits (339), Expect = 1e-34
 Identities = 61/87 (70%), Positives = 72/87 (82%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV  I+ Q
Sbjct: 8   HLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQ 67

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRR 263
           RLI+VDGKVRTD T+P GFMDV+S+ +
Sbjct: 68  RLIQVDGKVRTDSTFPTGFMDVISVEK 94


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  166 bits (404), Expect = 2e-42
 Identities = 75/104 (72%), Positives = 88/104 (84%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
           ++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTHDGRTIRYPD
Sbjct: 92  VDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPD 151

Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           PLIKVND+I+L++ T KI  FIKF +    M+TGGRN+GRVGTI
Sbjct: 152 PLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTI 195



 Score =  141 bits (341), Expect = 7e-35
 Identities = 62/85 (72%), Positives = 71/85 (83%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV  I+ Q
Sbjct: 8   HLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQ 67

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
           RLIKVDGKVRTD T+P GFMDV+S+
Sbjct: 68  RLIKVDGKVRTDSTFPTGFMDVISV 92


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -3

Query: 236 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 81
           SS+   + P+ P++   +E  F  NFQ      S L  IP++   G ++A+++GT
Sbjct: 27  SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 442 QSQRFHPVRHCNYED 486
           ++++ HPVRH  YED
Sbjct: 5   ENEKIHPVRHSKYED 19


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 409 WPHHPLPRPTYQSQR 453
           WPHH LP   + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 20/86 (23%), Positives = 33/86 (38%)
 Frame = -2

Query: 315 WIVNLPLTS*IRRNSSLVFSMRQHP*IQQDK*GQS*LSHQPL*GVVSQFSGLRFRSKHTS 136
           W+V          + SL+      P ++  K G    + +   G +   + L  ++ HTS
Sbjct: 237 WLVEFSSVCQAAESISLIAVNNNRPPVELPKSGDVLSNREWEAGKIDAMNSLIAQNLHTS 296

Query: 135 DDSSGKSPGASTRATCGDRLTVSVHT 58
                 SP AST ++      V  HT
Sbjct: 297 ASQVSLSPMASTASSSVTNSPVDTHT 322


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 412 PHHPLPRPTYQSQRFHPVRHCNYEDY 489
           PH+  P    + Q+ HPV+  N+  Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/56 (23%), Positives = 30/56 (53%)
 Frame = +3

Query: 153 GNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSLRRLMNCFV*SMMLRADSQSTV 320
           G+ + + +++R I V+   ++ P +P    + +SLR   +C+  S++L   S   +
Sbjct: 657 GSPLDRELQRRSIAVNLCQKSVPLFPTTLGEALSLREDKDCYTMSLLLDVSSTGKI 712


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 337 SLLRGDTVDCESALNIID*TKQ 272
           S  RGDT D  +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
 Frame = +2

Query: 233 WIYGCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK-RVATGPKNVPYLVTHD 409
           W   C  I +    F  +    G +   +I     K  LC     V T PKN  Y+V   
Sbjct: 32  WCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDVHTDPKNTEYIVASG 91

Query: 410 GR 415
           GR
Sbjct: 92  GR 93


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 111 LVIFLRNRLKYALTGNEVLKIV 176
           L+ F+  RL++ LT  E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 415 HHPLPRPTYQSQRFHPVR 468
           H PLPRP  Q +   PVR
Sbjct: 720 HKPLPRPPVQVETREPVR 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,025
Number of Sequences: 5004
Number of extensions: 53932
Number of successful extensions: 158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)