Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0975.Seq
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 149 1e-36
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 146 1e-35
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 145 2e-35
11_06_0087 - 19919224-19922304 32 0.36
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.63
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 2.6
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 3.4
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 4.5
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 27 7.8
04_03_1015 - 21734381-21736534 27 7.8
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 27 7.8
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 149 bits (362), Expect = 1e-36
Identities = 67/104 (64%), Positives = 82/104 (78%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
I KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G K +P+L T+DGRTIRYPD
Sbjct: 108 IAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYPD 167
Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
PLIK ND+I++D+ T KI+DFIKF GN+ M+TGGRN GRVG I
Sbjct: 168 PLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRVGVI 211
Score = 145 bits (351), Expect = 2e-35
Identities = 64/87 (73%), Positives = 74/87 (85%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ Q
Sbjct: 24 HLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQ 83
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRR 263
R + VDGKVRTD TYPAGFMDVVS+ +
Sbjct: 84 RHVMVDGKVRTDKTYPAGFMDVVSIAK 110
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 146 bits (354), Expect = 1e-35
Identities = 65/104 (62%), Positives = 81/104 (77%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
I KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYPD
Sbjct: 92 IPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPD 151
Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
PLIK ND+I++D+ T KI+DFIKF GN+ M+TGGRN GRVG I
Sbjct: 152 PLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVI 195
Score = 144 bits (350), Expect = 3e-35
Identities = 63/85 (74%), Positives = 74/85 (87%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ Q
Sbjct: 8 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQ 67
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
R + VDGKVRTD TYPAGFMDV+S+
Sbjct: 68 RHVLVDGKVRTDKTYPAGFMDVISI 92
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 145 bits (352), Expect = 2e-35
Identities = 64/104 (61%), Positives = 81/104 (77%)
Frame = +2
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
I KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYPD
Sbjct: 92 IPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPD 151
Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
P+IK ND+I++D+ T KI+DFIKF GN+ M+TGGRN GRVG I
Sbjct: 152 PIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVI 195
Score = 144 bits (350), Expect = 3e-35
Identities = 63/85 (74%), Positives = 74/85 (87%)
Frame = +3
Query: 3 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ Q
Sbjct: 8 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQ 67
Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
R + VDGKVRTD TYPAGFMDV+S+
Sbjct: 68 RHVLVDGKVRTDKTYPAGFMDVISI 92
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 31.9 bits (69), Expect = 0.36
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 375 DLRMFRTW*RMMAA-PSATQTHLSKSTIPSS*TLQLRRL 488
DL R W +A PS T HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.63
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 126 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 25
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 139 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 11
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 23 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 187
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 275 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 379
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 171 FSGLRFRSKHTSDDSSGKSPGASTRATCG 85
FSGLR S+ S S SP A++ CG
Sbjct: 9 FSGLRLDSRRLSSSSLPTSPSAASSNGCG 37
>04_03_1015 - 21734381-21736534
Length = 717
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +3
Query: 339 STSCVKSSVWRPDLRMFRTW*RMMAAPSATQTHLSKSTIPSS 464
S+S V S+V+ LR+ T R +AA THL+ ST PS+
Sbjct: 38 SSSQVPSAVYASLLRL-ATSHRSLAAARRIATHLASSTAPST 78
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 245 IHKSSRISRVSPNFPINLYEALFHNFQDFVSG 150
+H+SS ++R++P F + Y L H + ++ G
Sbjct: 1024 LHRSSSVARIAPEFVV--YSELLHTKRSYMHG 1053
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,564,639
Number of Sequences: 37544
Number of extensions: 381501
Number of successful extensions: 1068
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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