Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0975.Seq
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             163   1e-40
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   3.5  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)                  28   6.1  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  163 bits (395), Expect = 1e-40
 Identities = 73/85 (85%), Positives = 79/85 (92%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           H+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIVKQ
Sbjct: 432 HMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQ 491

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSL 257
           RLIK+DGKVRTD TYPAGFMDVV++
Sbjct: 492 RLIKIDGKVRTDTTYPAGFMDVVTI 516



 Score =  157 bits (382), Expect = 4e-39
 Identities = 69/104 (66%), Positives = 86/104 (82%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
           I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD RTIRYPD
Sbjct: 516 IDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPD 575

Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           P IKVND++ +DI T K++D+IKF +GN+ M+ GGRN+GRVG +
Sbjct: 576 PNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGRVGMV 619


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +2

Query: 125 EES--SEVCFDRKRSPENCE 178
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -1

Query: 202 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 86
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


>SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)
          Length = 818

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +3

Query: 411 AAPSATQTHLSKSTIPSS*TLQLRRLWTSSSFDLGTCV 524
           ++PS T   LS S  PS+ +L LR+  TS++FD+   V
Sbjct: 695 SSPSPTPP-LSNSLPPSTLSLMLRKKRTSNAFDINNIV 731


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,894,546
Number of Sequences: 59808
Number of extensions: 431084
Number of successful extensions: 1049
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)