Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0975.Seq
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   141   4e-34
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   4.0  
AF025464-2|AAN84804.1|  496|Caenorhabditis elegans Prion-like-(q...    28   5.3  
AF025464-1|AAN84805.1|  529|Caenorhabditis elegans Prion-like-(q...    28   5.3  
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z81521-3|CAB04225.1|  353|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...    27   9.3  
AC006834-7|AAF40003.2|  176|Caenorhabditis elegans Lipid deplete...    27   9.3  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  141 bits (341), Expect = 4e-34
 Identities = 65/104 (62%), Positives = 78/104 (75%)
 Frame = +2

Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
           IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DGRTIRYPD
Sbjct: 91  IERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPD 150

Query: 434 PLIKVNDSIQLDIATTKIMDFIKF*SGNLCMITGGRNLGRVGTI 565
           P +KVND+I  +I+T KI D +KF  GNL  +TGGRN+GRVG I
Sbjct: 151 PHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGII 194



 Score =  128 bits (309), Expect = 3e-30
 Identities = 60/92 (65%), Positives = 70/92 (76%)
 Frame = +3

Query: 3   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 182
           HLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+ Q
Sbjct: 7   HLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQ 66

Query: 183 RLIKVDGKVRTDPTYPAGFMDVVSLRRLMNCF 278
           R+++VDGKVRT   +P GFMDVV++ R    F
Sbjct: 67  RVVRVDGKVRTCHKFPTGFMDVVAIERTNEYF 98


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +2

Query: 299 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 430
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 415 HHPLPRPTYQSQRFHPVRHCNYEDYGLHQVLIWELV 522
           HH    PTY    F+P  H +Y+ + L+  + +++V
Sbjct: 32  HHHHQSPTYPQSYFNPYSHQSYQQHHLNSDVNFQMV 67


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 456  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 292
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>AF025464-2|AAN84804.1|  496|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform a protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 257 Q*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 111
           Q  N H++S+     PN+  N Y+     FQ     Q  + + PQ+ +Q
Sbjct: 207 QQQNYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 255


>AF025464-1|AAN84805.1|  529|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform b protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 257 Q*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 111
           Q  N H++S+     PN+  N Y+     FQ     Q  + + PQ+ +Q
Sbjct: 229 QQQNYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 277


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 88  WGPVDGLGAYTPPSLSNIHALGAF 17
           +GP+ GLG +T P+L  +   G F
Sbjct: 75  FGPIPGLGNFTLPTLGTLPGFGNF 98


>Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical
           protein Y69H2.10a protein.
          Length = 572

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 88  WGPVDGLGAYTPPSLSNIHALGAF 17
           +GP+ GLG +T P+L  +   G F
Sbjct: 75  FGPIPGLGNFTLPTLGTLPGFGNF 98


>Z81521-3|CAB04225.1|  353|Caenorhabditis elegans Hypothetical
           protein F32A11.3 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 68  ETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTP 187
           + V + P+VA  +    + +E S  CF RK+  E  E  P
Sbjct: 145 QQVQQKPKVAPKMLHKMYDDEESGYCFARKKDVEQEEEVP 184


>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
            ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
 Frame = +3

Query: 84   PHKLRECLPLVIFLRNRLKYALT---GNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 254
            PH        V  +R  ++  ++    N ++ +V +    +    R + T P   +DV  
Sbjct: 1711 PHLSNSAFQTVCLMRELMQNVISTKDANHLMILVTRSTEHLLHAYRLEGTPPKNLLDVEW 1770

Query: 255  LRRLMNCFV*SMMLRADSQSTVSPLRRLSTSCVK 356
             RRL + F+  M L  +    V   RR++T+ ++
Sbjct: 1771 ARRLRDLFIGLMRLLQNYFPLVELSRRITTAIMQ 1804


>AC006834-7|AAF40003.2|  176|Caenorhabditis elegans Lipid depleted
           protein 5 protein.
          Length = 176

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 365 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMD 493
           ++TG  N+P   +HD + +   D L K +    + +++ + MD
Sbjct: 20  LSTGKDNLPVTRSHDAKKVELNDILDKPSQKTPVKVSSDETMD 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,413,605
Number of Sequences: 27780
Number of extensions: 310039
Number of successful extensions: 818
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)