Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0974.Seq
(557 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597... 30 1.1
07_03_1160 - 24430240-24431268 29 2.5
05_01_0192 + 1394342-1396645 29 3.3
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 29 3.3
09_06_0257 + 21891523-21891578,21891911-21892421,21893021-218930... 28 4.4
04_04_1334 - 32723950-32724121,32724527-32724558,32724665-327247... 28 4.4
05_01_0197 - 1417672-1417899,1418921-1418974,1419267-1419552,142... 28 5.8
09_04_0380 - 17117134-17118093 27 7.7
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849... 27 7.7
>03_04_0169 -
17959262-17959304,17959441-17959532,17959682-17959759,
17959938-17960075,17960174-17960302,17960556-17960685,
17960797-17960974,17961177-17961315,17961399-17961488,
17961633-17961794,17961966-17962130,17962250-17962387,
17962827-17963006,17963405-17963533,17963878-17964113,
17964233-17964395,17965260-17965628,17965724-17965828
Length = 887
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 115 GLKDQILA-LRWVKENIDAFGGDPGKVTLAGIGTG 216
GL D+ILA L WV+ N+ A GDP + L + +G
Sbjct: 76 GLWDEILAALTWVEGNMGAVLGDPRRPLLLSVRSG 110
>07_03_1160 - 24430240-24431268
Length = 342
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1
Query: 218 PPVPMPASVTFPGSPPKASIFSLTQRKARI*SLSPWLPDTSGVSTHKNP*GP 63
PP P P PPK + + + S +P +PD ST NP GP
Sbjct: 175 PPKPDQPPQPIPNGPPKPDMLPMPKPDGSPNSYAPSVPDQ---STQPNPNGP 223
>05_01_0192 + 1394342-1396645
Length = 767
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -1
Query: 221 SPPVPMPASVTFPGSPPKASIFSLTQRKARI*SLSPWLPDTSGVST 84
SP P P T PP+A + S A + + P P GVST
Sbjct: 253 SPSKPSPRMATPSSPPPEAPVSSAAPPPASLNPMLPSPPQLPGVST 298
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +1
Query: 58 RLGPYGFL--CVDT---PEVSGNQGLKDQILALRWVKENIDAFGGDPGKVTLAGIGTG 216
RL G + C+D P+ + + D + +V NI ++GGDP ++ L G G
Sbjct: 169 RLAERGIIVACIDYRNFPQGTIGDMVSDASQGISYVCNNIASYGGDPNRIYLVGQSAG 226
>09_06_0257 +
21891523-21891578,21891911-21892421,21893021-21893092,
21893571-21893875,21894085-21894196,21894514-21894750,
21894933-21895640
Length = 666
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = +3
Query: 174 WRPWKS---YAGWHRHRRRKCPHACTLWQ 251
WR W + A W +H+RRK + + W+
Sbjct: 569 WRTWAACFIQAAWRQHQRRKLAESLSRWE 597
>04_04_1334 -
32723950-32724121,32724527-32724558,32724665-32724708,
32724962-32725123,32725984-32726422
Length = 282
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 248 P*STCMRTFSPPVPMPASVTFPGSP 174
P S C PP P P S T PGSP
Sbjct: 54 PASGCSEAL-PPYPAPGSYTLPGSP 77
>05_01_0197 -
1417672-1417899,1418921-1418974,1419267-1419552,
1421768-1422291
Length = 363
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 153 RKYRCFWWRPWKSYAGWHR 209
R+ RC W R W+ GW R
Sbjct: 51 RRRRCAWIRRWRRRGGWFR 69
>09_04_0380 - 17117134-17118093
Length = 319
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +1
Query: 34 IILVTINFRLGPYGFLCVDTPEVSGNQGLKDQILALRWVKENIDAF---GGDPGKVTLAG 204
+I V++++RL P L D AL W D + GD G+V LAG
Sbjct: 110 LIAVSVDYRLAPEHLLPA---------AYDDSWAALNWALSGADPWLSEHGDTGRVFLAG 160
Query: 205 IGTGG 219
+ GG
Sbjct: 161 VSAGG 165
>04_03_0630 -
18182681-18182931,18183397-18183463,18184899-18184964,
18185057-18185178,18185263-18185425,18186082-18186329,
18186418-18186751,18186857-18187000,18187079-18187144
Length = 486
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 221 SPPVPMPASVTFPGSPPKASI 159
SPP P P S PGSPP A +
Sbjct: 3 SPPPP-PPSAAAPGSPPSAQV 22
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,377,973
Number of Sequences: 37544
Number of extensions: 325705
Number of successful extensions: 1122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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