Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0974.Seq
(557 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15860.2 68418.m01856 expressed protein 31 0.39
At5g15860.1 68418.m01855 expressed protein 31 0.39
At3g02410.1 68416.m00228 hypothetical protein weak similarity to... 31 0.39
At3g12360.1 68416.m01541 ankyrin repeat family protein contains ... 29 2.1
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 29 2.8
At2g04680.1 68415.m00478 DC1 domain-containing protein contains ... 29 2.8
At1g33060.2 68414.m04076 no apical meristem (NAM) family protein... 28 3.7
At1g33060.1 68414.m04075 no apical meristem (NAM) family protein... 28 3.7
At1g26120.1 68414.m03188 esterase-related contains similaity to ... 28 4.9
At4g34520.1 68417.m04906 fatty acid elongase 1 (FAE1) identical ... 27 6.4
At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR cla... 27 8.5
At2g34290.1 68415.m04195 protein kinase family protein contains ... 27 8.5
>At5g15860.2 68418.m01856 expressed protein
Length = 299
Score = 31.5 bits (68), Expect = 0.39
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +1
Query: 19 LMKHEIILVTINFRLGPYGFLCVDTPEVSGNQGLKDQILALRWVKENIDAFGGDPGKVTL 198
L + +II+ +++R P G + + S QG+ +V NI AFGGDP ++ L
Sbjct: 181 LAERDIIVACLDYRNFPQGTISDMVTDAS--QGIS-------FVCNNISAFGGDPNRIYL 231
Query: 199 AGIGTG 216
G G
Sbjct: 232 MGQSAG 237
>At5g15860.1 68418.m01855 expressed protein
Length = 427
Score = 31.5 bits (68), Expect = 0.39
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +1
Query: 19 LMKHEIILVTINFRLGPYGFLCVDTPEVSGNQGLKDQILALRWVKENIDAFGGDPGKVTL 198
L + +II+ +++R P G + + S QG+ +V NI AFGGDP ++ L
Sbjct: 181 LAERDIIVACLDYRNFPQGTISDMVTDAS--QGIS-------FVCNNISAFGGDPNRIYL 231
Query: 199 AGIGTG 216
G G
Sbjct: 232 MGQSAG 237
>At3g02410.1 68416.m00228 hypothetical protein weak similarity to
kynurenine formamidase [Mus musculus] GI:21552719
Length = 422
Score = 31.5 bits (68), Expect = 0.39
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +1
Query: 19 LMKHEIILVTINFRLGPYGFLCVDTPEVSGNQGLKDQILALRWVKENIDAFGGDPGKVTL 198
L + +II+ +++R P G + + + D + +V NI AFGGDP ++ L
Sbjct: 176 LAERDIIVACLDYRNFPQGTI---------SDMVSDAAQGISFVCNNISAFGGDPNRIYL 226
Query: 199 AGIGTG 216
G G
Sbjct: 227 MGQSAG 232
>At3g12360.1 68416.m01541 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 590
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 146 GLKKISMLLVETLEKLRWLASAQEAKMSSCMYFMATRFIQ*GHNRQW 286
G K +VE + KL WLAS M + + F+A+ +I G +W
Sbjct: 485 GETKAEKRVVEVINKLMWLAS-----MCTSVAFLASSYIVVGRKNEW 526
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +1
Query: 106 GNQGLKD----QILALRWVKENIDAFGGDPGKVTLAGIGTGGE 222
GN+ LKD + A+ W+KEN++ F G ++GI G E
Sbjct: 97 GNEFLKDISVGEDRAMNWIKENVEPF--IRGGTKISGIAVGNE 137
>At2g04680.1 68415.m00478 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 657
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Frame = -1
Query: 359 TKILGQSEWYCRIC-------FSHHQCWKCQSTVYYDL 267
T+ LG EW C++C + + C KC S V + L
Sbjct: 304 TRRLGHGEWKCKVCRKKVDGFYGAYTCLKCPSFVVHSL 341
>At1g33060.2 68414.m04076 no apical meristem (NAM) family protein
similar to NAC1 GB:AAF68626 GI:7716952 from (Medicago
truncatula)
Length = 652
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 97 EVSGNQGLKDQILALRWVKE-NIDA 168
EVSG+Q ILA RWV E N+D+
Sbjct: 388 EVSGSQQFVPDILASRWVSEQNVDS 412
>At1g33060.1 68414.m04075 no apical meristem (NAM) family protein
similar to NAC1 GB:AAF68626 GI:7716952 from (Medicago
truncatula)
Length = 648
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 97 EVSGNQGLKDQILALRWVKE-NIDA 168
EVSG+Q ILA RWV E N+D+
Sbjct: 388 EVSGSQQFVPDILASRWVSEQNVDS 412
>At1g26120.1 68414.m03188 esterase-related contains similaity to
esterase 6 GI:606998 from [Drosophila simulans] and
esterase GI:12584120 from [Sphingomonas elodea]
Length = 476
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +1
Query: 82 CVDT---PEVSGNQGLKDQILALRWVKENIDAFGGDPGKVTLAGIGTG 216
C+D P+ S + +KD + +V +I +GGDP ++ L G G
Sbjct: 241 CIDYRNFPQGSISDMVKDASSGISFVCNHIAEYGGDPDRIYLMGQSAG 288
>At4g34520.1 68417.m04906 fatty acid elongase 1 (FAE1) identical to
fatty acid elongase 1 [GI:881615]
Length = 506
Score = 27.5 bits (58), Expect = 6.4
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -3
Query: 339 GMVLSNLFQPSPMLEVSIHCLL*PY*INLVAIKYMHEDIFASC--ADASQRNFSRVSTKS 166
G+VL + +P+P+ V C L P + + K M DIF AD S RN + S
Sbjct: 65 GLVLYIVTRPNPVYLVDYSCYLPPPHLKVSVSKVM--DIFYQIRKADTSSRNVACDDPSS 122
Query: 165 ID 160
+D
Sbjct: 123 LD 124
>At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1054
Score = 27.1 bits (57), Expect = 8.5
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 85 VDTPEVSGNQGLKDQILALRWVKENIDAFGGDPG--KVTLAGIGTGGENVLMHVLYGNK 255
VD EV G KD+I+ + EN G D G V + GIG G+ L +LY ++
Sbjct: 167 VDESEVFGRDDDKDEIMRFL-IPEN----GKDNGITVVAIVGIGGVGKTTLSQLLYNDQ 220
>At2g34290.1 68415.m04195 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 265
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 132 SSFTLG*RKYRCFWWRPWKSYAG 200
S F L R WW P KSYAG
Sbjct: 151 SDFGLSKRDGDTTWWHPLKSYAG 173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,579,920
Number of Sequences: 28952
Number of extensions: 266797
Number of successful extensions: 857
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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