Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0973.Seq
(410 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 0.65
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 0.65
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 27 1.5
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 2.6
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc... 26 2.6
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 25 3.5
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb... 25 3.5
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 25 3.5
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 25 4.6
SPAC630.06c |||conserved fungal protein|Schizosaccharomyces pomb... 25 4.6
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 0.65
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -1
Query: 239 PGNTRRLAALNSHAXAARPVVGKYGFRTSQLAPVAV-SNTVSTTNRPIFGGANT 81
PGN+ ++A+N++ + PV S+L+ + + ++VS T + FG ANT
Sbjct: 1625 PGNSSGMSAMNTNTTSTTPV------SLSELSEITLFPSSVSPTWKKSFGNANT 1672
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 0.65
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -1
Query: 239 PGNTRRLAALNSHAXAARPVVGKYGFRTSQLAPVAV-SNTVSTTNRPIFGGANT 81
PGN+ ++A+N++ + PV S+L+ + + ++VS T + FG ANT
Sbjct: 1625 PGNSSGMSAMNTNTTSTTPV------SLSELSEITLFPSSVSPTWKKSFGNANT 1672
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 26.6 bits (56), Expect = 1.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 234 KYETSGSPKFACXRSTARRRQIWLSHISVGTCCRK 130
K+E +G+ FA R + R + L I+V + CR+
Sbjct: 587 KFEDAGASAFAFKRLSPELRDLTLYSIAVNSTCRQ 621
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 2.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 287 SVPYSNCSITIVLVFINMLKLTCSSEKY 370
S PYS S T + N + L+CS E Y
Sbjct: 184 SSPYSTTSSTSLYSLYNDISLSCSPEPY 211
>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 2.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 294 GTESVPPRHFKLSQNTGRPGKYETSGSPKFACXR 193
G + PPR + QNT G + S KFA R
Sbjct: 72 GGDQQPPRPLQRQQNTQGQGMKSGTASKKFATLR 105
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 3.5
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 131 SNTVSTTNRPIFGGA-NTGTFSPQSAAGDEEEN*N 30
SN++ +TN P+FG A T +A EEN N
Sbjct: 161 SNSIKSTNAPVFGTAVKNVTGENILSASSSEENLN 195
>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 25.4 bits (53), Expect = 3.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 407 FFIVTFFIYLLFDISPRSKLVLTYL 333
FF++T Y +FD+S R LT L
Sbjct: 49 FFLLTLVFYWVFDLSRRRATQLTIL 73
>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 3.5
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +2
Query: 200 HANLGLPDVSYFPGRPVFWLSLKCLGGTDSVPYSNCSITI 319
+A L D + P P+ W CL GT + N ++ +
Sbjct: 113 NAYLNTLDETCMPDSPLLWKDKTCLEGTSMLDVINTNLRV 152
>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.0 bits (52), Expect = 4.6
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +2
Query: 233 FPGRPVFWLSLKCLGGTDSVPYSNCSITIVLVFINMLKLTCSSEKYQIIN 382
FPG F+L G D + YS L K CS EK+ I+N
Sbjct: 214 FPGNEKFYL------GFDDISYSKLIADFQLWMT--FKAECSEEKFNIVN 255
>SPAC630.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 188
Score = 25.0 bits (52), Expect = 4.6
Identities = 9/41 (21%), Positives = 25/41 (60%)
Frame = -3
Query: 369 YFSEEQVSFNIFINTKTIVIEQXEYGTESVPPRHFKLSQNT 247
Y +++Q +FN+F + T+V + E ++ P ++ + +++
Sbjct: 57 YPNDDQATFNLFSDVNTVVTKVTEPSIKNSRPLNYYILEDS 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,673,294
Number of Sequences: 5004
Number of extensions: 32125
Number of successful extensions: 74
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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