Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0973.Seq
(410 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 49 2e-06
U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical pr... 39 0.001
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 38 0.002
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 38 0.002
U97403-2|AAB52472.2| 649|Caenorhabditis elegans Hypothetical pr... 30 0.75
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 29 0.99
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 29 0.99
AL021475-1|CAA16312.1| 758|Caenorhabditis elegans Hypothetical ... 28 3.0
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 27 4.0
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 27 4.0
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 27 4.0
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 27 4.0
Z73098-10|CAA97336.2| 391|Caenorhabditis elegans Hypothetical p... 27 7.0
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 27 7.0
Z81015-2|CAB02660.1| 411|Caenorhabditis elegans Hypothetical pr... 26 9.2
U50071-7|AAV34805.1| 905|Caenorhabditis elegans Uncoordinated p... 26 9.2
U50071-6|AAQ91911.1| 1004|Caenorhabditis elegans Uncoordinated p... 26 9.2
U50071-5|AAA93443.1| 2039|Caenorhabditis elegans Uncoordinated p... 26 9.2
U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated p... 26 9.2
U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated p... 26 9.2
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 26 9.2
U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin pr... 26 9.2
U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin pr... 26 9.2
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 26 9.2
U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein. 26 9.2
U21731-1|AAA85852.1| 985|Caenorhabditis elegans UNC-44 protein. 26 9.2
AL132948-6|CAC51070.1| 395|Caenorhabditis elegans Hypothetical ... 26 9.2
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 48.8 bits (111), Expect = 2e-06
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Frame = +3
Query: 81 CICTTEYRPVCGTNGVTYGNRCQLRCAK-----AIFAYDGPCC 194
C C + RPVCGT+ VTY N C LRC + +F Y+G CC
Sbjct: 19 CDCPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTCC 61
Score = 40.3 bits (90), Expect = 5e-04
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Frame = +3
Query: 87 CTTEYRPVCGTNGVTYGNRCQLR---CAKA----IFAYDGPCC 194
C Y P+CGTNGVT+ N C L+ C A AY G CC
Sbjct: 772 CDNSYDPLCGTNGVTFTNACSLQKEICESANSTIEVAYTGMCC 814
Score = 36.3 bits (80), Expect = 0.009
Identities = 26/72 (36%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Frame = +3
Query: 57 CTLGAESTCICTTEYRPVCGTNGVTYGNRCQL---RCA---------KAIFAYDGPCCGG 200
C E C EY PVC +NG N C+L RC K + YDG CC
Sbjct: 862 CNEVKECNNACPKEYSPVCASNGQNIVNECELDKIRCLVENNVTTGDKLVKDYDGECC-- 919
Query: 201 MRI*GCQTSRIS 236
RI C S S
Sbjct: 920 -RIENCDISVFS 930
Score = 30.7 bits (66), Expect = 0.43
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 87 CT-TEYRPVCGTNGVTYGNRC 146
CT TE+ PVC TNG Y N C
Sbjct: 119 CTNTEFDPVCDTNGSVYRNLC 139
Score = 30.3 bits (65), Expect = 0.57
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 87 CTTEYRPVCGTNGVTYGNRCQLRCAKAIFAYDG 185
C T+ +PVC + G +GN C+ ++ I A G
Sbjct: 537 CPTDGQPVCDSAGNLHGNLCEFTYSRCIAASKG 569
Score = 30.3 bits (65), Expect = 0.57
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 87 CTTEYRPVCGTNGVTYGNRCQLRCAKAI 170
CT + P+C ++ TY N CQ R K +
Sbjct: 590 CTDDKHPICASDFSTYENLCQFRKQKCL 617
Score = 27.5 bits (58), Expect = 4.0
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 10/42 (23%)
Frame = +3
Query: 99 YRPVCGTNGVTYGNRC---QLRC------AKAI-FAYDGPCC 194
+ PVC T GVT+ N C Q C K I +Y G CC
Sbjct: 929 FSPVCDTEGVTHANMCLMDQNACIQMKKNKKTIQVSYQGQCC 970
Score = 26.6 bits (56), Expect = 7.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 87 CTTEYRPVCGTNGVTYGNRCQLRCAKAI 170
C +++ PVC + G T+ N C + I
Sbjct: 818 CPSDFSPVCDSKGSTHQNICHFGVKRCI 845
>U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical
protein ZK813.6 protein.
Length = 251
Score = 39.1 bits (87), Expect = 0.001
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Frame = +3
Query: 75 STCICTTEYRPVCGTNG---VTYGNRCQLRCAK-----AIFAYDGPCC 194
STC C E PVC G TY N+C +CA+ + Y+G CC
Sbjct: 23 STCSCKPEIDPVCVREGPYQYTYSNKCVFQCAQENKKDLVLLYEGSCC 70
Score = 29.5 bits (63), Expect = 0.99
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 78 TCICTTEYRPVCGTNGVTYGNRC 146
T C TE+ PVC G T+ N C
Sbjct: 122 TAPCPTEWNPVCDKKGQTHANFC 144
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 38.3 bits (85), Expect = 0.002
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +3
Query: 54 CCTLGAESTCIC---TTEYRPVCGTNGVTYGNRCQLRCA 161
C + + C+C T E++ VCG++G TY N C+L+ A
Sbjct: 454 CVVVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNA 492
Score = 33.1 bits (72), Expect = 0.081
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 87 CTTEYRPVCGTNGVTYGNRCQLR 155
C RPVC TNG T+ N C+++
Sbjct: 397 CEDVMRPVCATNGETFDNECEMK 419
Score = 32.7 bits (71), Expect = 0.11
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 78 TCICTTEYRPVCGTNGVTYGNRCQL 152
TC ++ Y P+CG++G+ Y N+C L
Sbjct: 685 TCNLSSNY-PICGSDGIVYNNQCHL 708
Score = 31.9 bits (69), Expect = 0.19
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 6/38 (15%)
Frame = +3
Query: 96 EYRPVCGTNGVTYGNRCQLR---CAKAIF---AYDGPC 191
E + VCGT+GVTY + C ++ C ++ F A++G C
Sbjct: 547 EGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKC 584
Score = 30.7 bits (66), Expect = 0.43
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 87 CTTEYRPVCGTNGVTYGNRCQLRCA 161
CT VCGT+G TY N C L+ A
Sbjct: 323 CTMNSAHVCGTDGKTYLNECFLKLA 347
Score = 28.3 bits (60), Expect = 2.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 108 VCGTNGVTYGNRCQLR 155
VCG++G TY N C+L+
Sbjct: 880 VCGSDGTTYSNLCELK 895
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 90 TTEYRPVCGTNGVTYGNRCQLR 155
+ E PVC ++GV Y + C LR
Sbjct: 254 SVESSPVCSSHGVDYQSSCHLR 275
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 38.3 bits (85), Expect = 0.002
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +3
Query: 54 CCTLGAESTCIC---TTEYRPVCGTNGVTYGNRCQLRCA 161
C + + C+C T E++ VCG++G TY N C+L+ A
Sbjct: 462 CVVVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNA 500
Score = 33.1 bits (72), Expect = 0.081
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 87 CTTEYRPVCGTNGVTYGNRCQLR 155
C RPVC TNG T+ N C+++
Sbjct: 405 CEDVMRPVCATNGETFDNECEMK 427
Score = 31.9 bits (69), Expect = 0.19
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 6/38 (15%)
Frame = +3
Query: 96 EYRPVCGTNGVTYGNRCQLR---CAKAIF---AYDGPC 191
E + VCGT+GVTY + C ++ C ++ F A++G C
Sbjct: 555 EGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKC 592
Score = 30.7 bits (66), Expect = 0.43
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 87 CTTEYRPVCGTNGVTYGNRCQLRCA 161
CT VCGT+G TY N C L+ A
Sbjct: 331 CTMNSAHVCGTDGKTYLNECFLKLA 355
Score = 28.3 bits (60), Expect = 2.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 108 VCGTNGVTYGNRCQLR 155
VCG++G TY N C+L+
Sbjct: 819 VCGSDGTTYSNLCELK 834
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 90 TTEYRPVCGTNGVTYGNRCQLR 155
+ E PVC ++GV Y + C LR
Sbjct: 262 SVESSPVCSSHGVDYQSSCHLR 283
>U97403-2|AAB52472.2| 649|Caenorhabditis elegans Hypothetical
protein T10E9.4 protein.
Length = 649
Score = 29.9 bits (64), Expect = 0.75
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 12 TMKTSIVLIFLLVACCTLGAESTCICTTEYRPVCGTNGVTY 134
T + + +LIFL+V+ + + ST TTE PV G +
Sbjct: 2 TFRLTCLLIFLIVSASAVDSTSTAELTTETAPVTAPTGPNF 42
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 29.5 bits (63), Expect = 0.99
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 72 ESTCICTTEYRPVCGTNGVTYGNRCQLRC 158
+ TC+ T+++ PVC G RC+ C
Sbjct: 416 DGTCMHTSDHSPVCQCKNGFIGKRCEKEC 444
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 29.5 bits (63), Expect = 0.99
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 72 ESTCICTTEYRPVCGTNGVTYGNRCQLRC 158
+ TC+ T+++ PVC G RC+ C
Sbjct: 416 DGTCMHTSDHSPVCQCKNGFIGKRCEKEC 444
>AL021475-1|CAA16312.1| 758|Caenorhabditis elegans Hypothetical
protein Y32F6B.1 protein.
Length = 758
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +3
Query: 66 GAESTCICT-TEYRPVCGTNGVTYGNRCQLRCA 161
G C+C T PVC +G Y + C CA
Sbjct: 511 GCRDDCMCEQTPLYPVCDVSGSAYYSPCHAGCA 543
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 57 CTLGAESTCICTTEYRPVCGTNGVTYGNRCQLRCAKAIFAYDGPCC 194
CT E+T +C C YG+ C+L C+K + GP C
Sbjct: 384 CTCVRENTLMCAPN-TGFCRCKPGFYGDNCELACSKDSY---GPNC 425
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 57 CTLGAESTCICTTEYRPVCGTNGVTYGNRCQLRCAKAIFAYDGPCC 194
CT E+T +C C YG+ C+L C+K + GP C
Sbjct: 384 CTCVRENTLMCAPN-TGFCRCKPGFYGDNCELACSKDSY---GPNC 425
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 57 CTLGAESTCICTTEYRPVCGTNGVTYGNRCQLRCAKAIFAYDGPCC 194
CT E+T +C C YG+ C+L C+K + GP C
Sbjct: 384 CTCVRENTLMCAPN-TGFCRCKPGFYGDNCELACSKDSY---GPNC 425
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 57 CTLGAESTCICTTEYRPVCGTNGVTYGNRCQLRCAKAIFAYDGPCC 194
CT E+T +C C YG+ C+L C+K + GP C
Sbjct: 384 CTCVRENTLMCAPN-TGFCRCKPGFYGDNCELACSKDSY---GPNC 425
>Z73098-10|CAA97336.2| 391|Caenorhabditis elegans Hypothetical
protein T21C9.9 protein.
Length = 391
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +3
Query: 33 LIFLLVACCTL--GAESTCICTTEYRPVCGTNGVTYGN 140
+IF VA TL G + C C P CG G Y +
Sbjct: 1 MIFFSVALTTLLVGLSNGCFCPPVISPSCGCGGGGYSS 38
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Frame = +3
Query: 57 CTLGAESTCICTTEYRPVCGTNGVTYGNRCQLRC---AKAIFAYDGPCCGG 200
C +G TC+C + Y P + +R +R K +D C GG
Sbjct: 1916 CLIG---TCLCDSGYEPSSDRSSCVLNDRYNVRSRSYPKTFCTFDSECTGG 1963
>Z81015-2|CAB02660.1| 411|Caenorhabditis elegans Hypothetical
protein C11E4.3 protein.
Length = 411
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 6 SKTMKTSIVLIFLLVACCTLGAESTCICTTEY 101
SKT++ I +++ C +LGA +T + EY
Sbjct: 47 SKTLRMRIFWWIVIIICISLGAFTTVLIIIEY 78
>U50071-7|AAV34805.1| 905|Caenorhabditis elegans Uncoordinated
protein 44, isoform b protein.
Length = 905
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Frame = -1
Query: 155 SQLAPVAVSNTVSTTNRPIFG-----GANTGTF--SPQSAAGDEE 42
+++APVA S+ ++T+N FG G+ +G F P AG E+
Sbjct: 8 AKIAPVATSSPIATSNSQSFGIAPRAGSISGQFQQQPLHGAGPED 52
>U50071-6|AAQ91911.1| 1004|Caenorhabditis elegans Uncoordinated
protein 44, isoform g protein.
Length = 1004
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Frame = -1
Query: 155 SQLAPVAVSNTVSTTNRPIFG-----GANTGTF--SPQSAAGDEE 42
+++APVA S+ ++T+N FG G+ +G F P AG E+
Sbjct: 912 AKIAPVATSSPIATSNSQSFGIAPRAGSISGQFQQQPLHGAGPED 956
>U50071-5|AAA93443.1| 2039|Caenorhabditis elegans Uncoordinated
protein 44, isoform a protein.
Length = 2039
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Frame = -1
Query: 155 SQLAPVAVSNTVSTTNRPIFG-----GANTGTF--SPQSAAGDEE 42
+++APVA S+ ++T+N FG G+ +G F P AG E+
Sbjct: 912 AKIAPVATSSPIATSNSQSFGIAPRAGSISGQFQQQPLHGAGPED 956
>U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated
protein 44, isoform e protein.
Length = 1841
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Frame = -1
Query: 155 SQLAPVAVSNTVSTTNRPIFG-----GANTGTF--SPQSAAGDEE 42
+++APVA S+ ++T+N FG G+ +G F P AG E+
Sbjct: 912 AKIAPVATSSPIATSNSQSFGIAPRAGSISGQFQQQPLHGAGPED 956
>U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated
protein 44, isoform c protein.
Length = 1867
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Frame = -1
Query: 155 SQLAPVAVSNTVSTTNRPIFG-----GANTGTF--SPQSAAGDEE 42
+++APVA S+ ++T+N FG G+ +G F P AG E+
Sbjct: 912 AKIAPVATSSPIATSNSQSFGIAPRAGSISGQFQQQPLHGAGPED 956
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Frame = -1
Query: 155 SQLAPVAVSNTVSTTNRPIFG-----GANTGTF--SPQSAAGDEE 42
+++APVA S+ ++T+N FG G+ +G F P AG E+
Sbjct: 912 AKIAPVATSSPIATSNSQSFGIAPRAGSISGQFQQQPLHGAGPED 956
>U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin
protein.
Length = 1815
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Frame = -1
Query: 155 SQLAPVAVSNTVSTTNRPIFG-----GANTGTF--SPQSAAGDEE 42
+++APVA S+ ++T+N FG G+ +G F P AG E+
Sbjct: 912 AKIAPVATSSPIATSNSQSFGIAPRAGSISGQFQQQPLHGAGPED 956
>U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin
protein.
Length = 1867
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Frame = -1
Query: 155 SQLAPVAVSNTVSTTNRPIFG-----GANTGTF--SPQSAAGDEE 42
+++APVA S+ ++T+N FG G+ +G F P AG E+
Sbjct: 912 AKIAPVATSSPIATSNSQSFGIAPRAGSISGQFQQQPLHGAGPED 956
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Frame = -1
Query: 155 SQLAPVAVSNTVSTTNRPIFG-----GANTGTF--SPQSAAGDEE 42
+++APVA S+ ++T+N FG G+ +G F P AG E+
Sbjct: 912 AKIAPVATSSPIATSNSQSFGIAPRAGSISGQFQQQPLHGAGPED 956
>U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein.
Length = 1786
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Frame = -1
Query: 155 SQLAPVAVSNTVSTTNRPIFG-----GANTGTF--SPQSAAGDEE 42
+++APVA S+ ++T+N FG G+ +G F P AG E+
Sbjct: 912 AKIAPVATSSPIATSNSQSFGIAPRAGSISGQFQQQPLHGAGPED 956
>U21731-1|AAA85852.1| 985|Caenorhabditis elegans UNC-44 protein.
Length = 985
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Frame = -1
Query: 155 SQLAPVAVSNTVSTTNRPIFG-----GANTGTF--SPQSAAGDEE 42
+++APVA S+ ++T+N FG G+ +G F P AG E+
Sbjct: 82 AKIAPVATSSPIATSNSQSFGIAPRAGSISGQFQQQPLHGAGPED 126
>AL132948-6|CAC51070.1| 395|Caenorhabditis elegans Hypothetical
protein Y39B6A.7 protein.
Length = 395
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 212 GLPDVSYFPGRPVFWLSLKCLGGTDSVPY-SNCSITIVLVFINMLKLTCSSEKYQIINK 385
G PD+ G P WL C + + PY + I V ++ L + S+ + I++K
Sbjct: 146 GNPDIPMTHGSPAKWLDDSCYRSSKAFPYLVSQKIKNVTSSLSFLSCSGSTVDHGILSK 204
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,584,350
Number of Sequences: 27780
Number of extensions: 201004
Number of successful extensions: 641
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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